Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq684 82.4 5e-11 >seq684 Length=410242 Score = 82.4 bits (90), Expect = 5e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || |||||||||||||| ||||||||| | || | |||||||| || |||||| Sbjct 337744 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTA 337803 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| |||| || | ||||| || |||||| || | ||||| ||||| || || Sbjct 337804 CCTTTC-ACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGT 337862 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | |||||| || || || ||||| Sbjct 337863 AAGCGTTTTAACGAAAATTTGCAT 337886 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || ||||| || || ||||||||||| || ||||| |||||||| Sbjct 339367 CCACCACGCAAACGCAAAACCAAGTGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 339426 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 | ||| ||| | || ||||| ||||| || | ||| Sbjct 339427 AATGTACGTCCATCTTCCAACTGTTTGCCTGAAAA 339461 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || ||||| || || ||||||||||| || ||||| |||||||| Sbjct 367810 CCACCACGCAAACGCAAAACCAAGTGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 367869 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAAT 33620 | || ||| | || ||||||||||| || | ||| || Sbjct 367870 AAAGTACGTCCATCTTCCAATTGTTTGCCTGAAAACAT 367907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328693816544640