Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq684 82.4 5e-11
>seq684
Length=410242
Score = 82.4 bits (90), Expect = 5e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| || |||||||||||||| ||||||||| | || | |||||||| || ||||||
Sbjct 337744 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTA 337803
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|||| |||| || | ||||| || |||||| || | ||||| ||||| || ||
Sbjct 337804 CCTTTC-ACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGT 337862
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
| |||||| || || || |||||
Sbjct 337863 AAGCGTTTTAACGAAAATTTGCAT 337886
Score = 82.4 bits (90), Expect = 5e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | |||||| || ||||| || || ||||||||||| || ||||| ||||||||
Sbjct 339367 CCACCACGCAAACGCAAAACCAAGTGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 339426
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
| ||| ||| | || ||||| ||||| || | |||
Sbjct 339427 AATGTACGTCCATCTTCCAACTGTTTGCCTGAAAA 339461
Score = 82.4 bits (90), Expect = 5e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | |||||| || ||||| || || ||||||||||| || ||||| ||||||||
Sbjct 367810 CCACCACGCAAACGCAAAACCAAGTGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 367869
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAAT 33620
| || ||| | || ||||||||||| || | ||| ||
Sbjct 367870 AAAGTACGTCCATCTTCCAATTGTTTGCCTGAAAACAT 367907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328693816544640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |