Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1852 82.4 7e-11 seq833 82.4 7e-11 >seq1852 Length=8990 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||||||||| |||||| | ||||| | ||||| | ||||| | Sbjct 6382 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAG-AGCCATC 6440 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || ||| |||||| |||||||| || || ||||| ||||| Sbjct 6441 TGATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCA 6500 Query 25294 GCAAAGA 25300 |||| || Sbjct 6501 GCAACGA 6507 >seq833 Length=82521 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||||||||| |||||| | ||||| | ||||| | ||||| | Sbjct 80532 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAG-AGCCATC 80590 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || ||| |||||| |||||||| || || ||||| ||||| Sbjct 80591 TGATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCA 80650 Query 25294 GCAAAGA 25300 |||| || Sbjct 80651 GCAACGA 80657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445080257125440