Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq684 123 3e-23 seq2463 96.9 4e-15 seq1852 96.9 4e-15 seq833 96.9 4e-15 >seq684 Length=410242 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| |||||||| || || || |||||||| ||||||||||| Sbjct 337744 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTA 337803 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | |||||| || | |||||| || | ||| |||||||| || || Sbjct 337804 CCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 337863 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | |||||||||||||||||||| Sbjct 337864 AGCGTTTTAACGAAAATTTGCAT 337886 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||||||||||||||||||||| || || || || ||||| || || ||||| | Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||||||| | |||||| || | ||| |||||||| || || | Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 337296 GTCTTAACGAAAATTTGCATT 337316 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||||||||||||||| || || || |||||||| ||||| ||||| | Sbjct 366471 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366530 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| ||||| | |||||| || | ||| ||||| || || || | | Sbjct 366531 TTTACATTTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGA 366590 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 366591 GTCTTAACGAAAATTTGCATT 366611 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || |||||||| ||||| ||||| | Sbjct 367041 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 367100 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||||||| | |||||| || | ||| |||||||| || || | Sbjct 367101 TTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 367160 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 367161 GTCTTAACGAAAATTTGCATT 367181 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| |||| ||||||||||||||| || || |||||||| || |||||||| Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| || || Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | |||||| || || || |||||||| Sbjct 368127 AGAGTTTTCACAAATATCTGCATTTT 368152 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || || ||||| ||||||||||| | Sbjct 336894 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 336953 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||||||| | ||| || || | ||| |||||||| || || | Sbjct 336954 TTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337013 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 337014 GTCTTAACGAAAATTTGCATT 337034 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || ||||||||||| | |||||| |||||||| || || || ||||| || |||||||| Sbjct 339564 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 339623 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || ||| || | |||||| || |||||||||||||| || || Sbjct 339624 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 339683 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | |||||| || || || |||||||| Sbjct 339684 AGAGTTTTCACAAATATCTGCATTTT 339709 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||||||||||||||| || || || |||||||| ||||| ||||| | Sbjct 366184 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366243 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | |||||| || | || |||||||| || || | Sbjct 366244 TTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGC 366303 Query 134694 GTTTTAACGAAAATTTGCAT 134713 |||||||||||||||||||| Sbjct 366304 GTTTTAACGAAAATTTGCAT 366323 Score = 105 bits (116), Expect = 7e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || ||||| || ||||| ||||| | Sbjct 337464 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGTATTTTGCCT 337523 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||||||| | ||| || || | ||| |||||||| || || | Sbjct 337524 TTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337583 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 337584 GTCTTAACGAAAATTTGCATT 337604 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || |||||||| ||||| ||||| | Sbjct 366756 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366815 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | |||||| || | || |||||||| || || | Sbjct 366816 TTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGC 366875 Query 134694 GTTTTAACGAAAATTTGCAT 134713 |||||||||||||||||||| Sbjct 366876 GTTTTAACGAAAATTTGCAT 366895 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || || || ||||| ||||||||||| Sbjct 338028 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 338087 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | |||||| || | || |||||||| || || Sbjct 338088 CCTTTCACAATTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTA 338147 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || ||||||||||||||||| Sbjct 338148 AGCGTCTTAACGAAAATTTGCAT 338170 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||||||||||||||| || || || || ||||| || || ||||| | Sbjct 338312 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 338371 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | ||| |||||||| || || | Sbjct 338372 TTTACATTCTCTATTGTATCAGATGGTTCGACCTCCAAAGTGATGGTTTTCCCAGTAAGC 338431 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || ||||| ||||||||||| Sbjct 338432 GTCTTAACAAAAATTTGCAT 338451 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 339226 CCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 339285 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 339286 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCAAC 339345 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| Sbjct 339346 GTCTTCACAAATATCTGCAT 339365 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 367669 CCAGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 367728 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 367729 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCAAC 367788 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| Sbjct 367789 GTCTTCACAAATATCTGCAT 367808 >seq2463 Length=168562 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 21743 CCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTT 21802 ||||||| || || ||||| ||||||||||| || | ||||||||| | ||||| |||| Sbjct 100104 CCTCGTCACGAGAGATCAACTCGTTGCTGAAGGTCAAACCGGGCATCAGGCCTCGCTTTT 100045 Query 21803 TAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACG 21862 | | | ||||||| ||| ||||| |||||||| || | || || ||| ||||||| Sbjct 100044 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATACCTTCAACAGCTGCGAACG 99985 Query 21863 CCACCA 21868 | |||| Sbjct 99984 CAACCA 99979 >seq1852 Length=8990 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| ||||| ||||||||||| ||||||||||| Sbjct 6524 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 6465 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | || || || | || || ||||| || ||| Sbjct 6464 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6405 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| ||||| Sbjct 6404 AATGTTTTCACAAAAATCTGCAT 6382 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| Sbjct 6237 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 6178 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||| || || | || || || | || || ||||| || ||| Sbjct 6177 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6118 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| ||||| Sbjct 6117 AATGTTTTCACAAAAATCTGCAT 6095 >seq833 Length=82521 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| ||||| ||||||||||| ||||||||||| Sbjct 80674 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 80615 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | || || || | || || ||||| || ||| Sbjct 80614 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80555 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| ||||| Sbjct 80554 AATGTTTTCACAAAAATCTGCAT 80532 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| Sbjct 80387 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 80328 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||| || || | || || || | || || ||||| || ||| Sbjct 80327 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80268 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| ||||| Sbjct 80267 AATGTTTTCACAAAAATCTGCAT 80245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505382340965840