Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq147 129 8e-25
>seq147
Length=144011
Score = 129 bits (142), Expect = 8e-25
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424
||||||| || || ||||| | || ||| || || || | | ||||||||| ||
Sbjct 32797 TTATCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 32738
Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484
|||||||||||| |||| |||||||||||||| || | ||| | ||| | ||
Sbjct 32737 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 32678
Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544
||||| || |||||||||| ||| || ||| || ||||||||||| || || || |||
Sbjct 32677 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCC 32618
Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT 68585
|| | ||| | | ||||| | ||||||||||| |||||
Sbjct 32617 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTT 32577
Score = 89.7 bits (98), Expect = 7e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374
|||||| | || ||||| || || || |||||| ||||| |||| ||||||||||||
Sbjct 31575 ATATTGCACAATTTCTGTGCAAAGGTTTGAACATTTTATAGTACCCAAATTTTGCTGATT 31516
Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434
|||| | || || || || ||||| | |||||||| || || |||||||| |||||
Sbjct 31515 CGACTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCGGTTTCAATTTGAGA 31456
Query 69435 TTCGATAAT 69443
|| || ||
Sbjct 31455 CTCAATTAT 31447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686886973472880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |