Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2463 125 6e-24 >seq2463 Length=168562 Score = 125 bits (138), Expect = 6e-24 Identities = 249/362 (69%), Gaps = 15/362 (4%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | |||||| ||||| | | |||||||| | || ||||| || |||||||| Sbjct 99747 CGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCAAATTGCT 99806 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 ||||||||| | ||||| ||||||||||| | |||| || || |||||| ||| Sbjct 99807 ATAGAAAATGTCCATTCCGAAATGTACAGCTTGTTGATTGACACCTACATCCGTGAT--- 99863 Query 44024 CACGAGAAGCATCGAT----TGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATA 44078 | | | ||| | ||| |||| || || || ||||| | | | || | | || | | Sbjct 99864 CCGGTGGAGCGT-GATTTTCTGTTCAACGCAATTGAAACGATTCCGTGTG-TGAAGAAAA 99921 Query 44079 AAGCAGACTGGGC----CCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTT 44134 ||||||| ||||| | || || | | | | ||| | | ||| ||||| | Sbjct 99922 AAGCAGATTGGGCTTTGCGTTGGATCGGTGACCGCCAATCA-CCATTTTCCGAACGTTTG 99980 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || ||||| |||| ||| ||||| ||||||||||| || || ||| | || || ||| Sbjct 99981 GTTGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGG 100040 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 || || || ||||| ||||||| || ||||| || || ||||| || |||||| Sbjct 100041 TTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGATCTCTCGTGAC 100100 Query 44255 GA 44256 || Sbjct 100101 GA 100102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443686564710