Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq684 96.9 3e-15 seq147 91.5 1e-13 >seq684 Length=410242 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || ||||||||||||||||||| || || | ||||||||||| || || Sbjct 339564 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 339623 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||| | |||| | | ||||| || ||| ||||| ||||| || | ||| || || Sbjct 339624 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 339683 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||||||||| || ||||| Sbjct 339684 AGAGTTTTCACAAATATCTGCAT 339706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || | || |||||||| ||||| || || | || |||||||| || || Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||||||| |||||| ||||| ||||| || | ||| || || Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||||||||| || ||||| Sbjct 368127 AGAGTTTTCACAAATATCTGCAT 368149 >seq147 Length=144011 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131552 TAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCG 131611 || |||||||| || ||||||| | | ||| || || |||| |||||||| Sbjct 31330 TACTTTTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCA 31271 Query 131612 CTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGC 131671 || ||||| || ||||| | |||| ||||| |||||||| || | ||| || Sbjct 31270 TGAGGGCACATCAGTGACCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGT 31211 Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttC 131731 | ||| | ||||| |||| |||||| ||| | || ||||| | || | | |||||| Sbjct 31210 ATCCAAAGGGCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTC 31151 Query 131732 AAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | | ||| || || ||||| || ||||| ||||||||||| || || Sbjct 31150 GCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGC 31101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424921235266704