Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq684 96.9 3e-15
seq147 91.5 1e-13
>seq684
Length=410242
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || ||||||||||||||||||| || || | ||||||||||| || ||
Sbjct 339564 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 339623
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
||| | |||| | | ||||| || ||| ||||| ||||| || | ||| || ||
Sbjct 339624 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 339683
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||||||||| || |||||
Sbjct 339684 AGAGTTTTCACAAATATCTGCAT 339706
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || | || |||||||| ||||| || || | || |||||||| || ||
Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| |||||| ||||| ||||| || | ||| || ||
Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||||||||| || |||||
Sbjct 368127 AGAGTTTTCACAAATATCTGCAT 368149
>seq147
Length=144011
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 131552 TAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCG 131611
|| |||||||| || ||||||| | | ||| || || |||| ||||||||
Sbjct 31330 TACTTTTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCA 31271
Query 131612 CTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGC 131671
|| ||||| || ||||| | |||| ||||| |||||||| || | ||| ||
Sbjct 31270 TGAGGGCACATCAGTGACCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGT 31211
Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttC 131731
| ||| | ||||| |||| |||||| ||| | || ||||| | || | | ||||||
Sbjct 31210 ATCCAAAGGGCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTC 31151
Query 131732 AAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781
| | ||| || || ||||| || ||||| ||||||||||| || ||
Sbjct 31150 GCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGC 31101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424921235266704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |