Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq265 351 3e-91 seq1033 170 6e-37 seq1852 154 4e-32 seq833 154 4e-32 seq684 138 3e-27 seq185 105 2e-17 seq2180 98.7 3e-15 seq2463 91.5 4e-13 seq147 86.0 2e-11 seq1440 84.2 7e-11 >seq265 Length=128937 Score = 351 bits (388), Expect = 3e-91 Identities = 560/803 (70%), Gaps = 3/803 (0%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| ||||| |||||||| || |||||||| || | || ||| | Sbjct 79072 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 79013 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| |||||||| |||||||| || | || |||||| || ||||| || ||| Sbjct 79012 GTTGAAATTATTGCAAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 78953 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || || ||||||| ||| | ||||| ||||| | ||| ||||| | ||| Sbjct 78952 GATACCGAACGACTGATTGGCGATGCGGCAAAGAATCAGGTTGCGTTGAATCCTCATAAT 78893 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||||||||| ||||||||||| ||| | | ||| ||| || || ||| Sbjct 78892 ACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATTTGATGATGCTGCTGTGCAGTCT 78833 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | ||||||| || |||| ||| | || || || ||||| | ||| | Sbjct 78832 GACATGAAACATTGGCCATTTAAAGTTATC---AATGATGGAACGAAACCTAAAATTCAA 78776 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || ||||| ||||| || || |||| ||| |||||||| | ||||| ||| Sbjct 78775 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCGGAAGAAATCAGCGCTATGGTGTTA 78716 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || |||||||||| ||| ||||| ||||| || |||| || | || || || ||| Sbjct 78715 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGACGCCGTAATT 78656 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || || |||||||| ||| | |||||| || || ||||| ||||| | ||| Sbjct 78655 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 78596 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 | || || |||||| | |||| || || ||||| || || || |||||||| ||||| Sbjct 78595 TCTGGTTTGAATGTTTTGCGAATTATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 78536 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||||| || | ||| | ||| |||| |||| || ||||| | ||||||||||| Sbjct 78535 CTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTACG 78476 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 |||||||| || | | || | || || || |||||||| || || | || |||||| Sbjct 78475 TTTGATGTGTCTATTTTGACCATCGAGGATGGCATTTTTGAGGTCAAGTCTACCGCTGGT 78416 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || ||||| | || ||||| || || Sbjct 78415 GACACTCACTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCTGAG 78356 Query 349919 TTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGA 349978 |||||||| | || | || || | |||||| | ||| |||||||| | | Sbjct 78355 TTTAAGCGAAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCGC 78296 Query 349979 ACTGCGTGTGAACGTGCTAAGCG 350001 || || |||||||| || || || Sbjct 78295 ACAGCTTGTGAACGAGCGAAACG 78273 Score = 100 bits (110), Expect = 9e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 183561 AATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCT 183620 || || | ||| ||||||||||| ||||| | | ||||| |||| | ||||||| | Sbjct 78267 AACGTGCGTTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 78326 Query 183621 GTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTA 183680 | || || | || | |||| ||||| |||| | ||||| | | | | | Sbjct 78327 GACATGTCCTTCTTGTTCTTTCGCTTAAACTCAGCCACGAAATGATTTACCATGCGATTG 78386 Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 || || || |||||||| || || || || ||||| |||| || || ||||| || || Sbjct 78387 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 78446 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || || || | ||||| || |||||||| ||||||||||| | ||||| Sbjct 78447 TCCTCGATGGTCAAAATAGACACATCAAACGTACCACCACCAAGGTCAAA 78496 >seq1033 Length=69817 Score = 170 bits (188), Expect = 6e-37 Identities = 332/485 (68%), Gaps = 8/485 (2%) Strand=Plus/Minus Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292 |||||| |||| | |||| |||||||||||| ||||| |||||||| || || | | Sbjct 53349 GTGTTGGAGTTTTCAAGAATGGTCGTGTAGAAATTATTGCCAATGATCAGGGCAATCGTA 53290 Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349 || || || || || || ||||| ||| ||||||| |||| || ||||| || | Sbjct 53289 TTACCCCGTCGTATGTGGCTTTTACACCGGAAGGTGAGCGTCTGATCGGCGATTCCGCGA 53230 Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 ||||||| | || | | ||||| | |||||||| || ||||||||||| | |||| Sbjct 53229 AAAATCA-GTTGACCACCAATCCTGAGAATACGGTATTCGATGCTAAGCGTATGGTTGGA 53171 Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468 || | || ||||| | ||| | |||| ||| | || ||||| || ||| Sbjct 53170 CGAGAATGGTCGGACAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCGTTTACAGT-GTT 53112 Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528 |||| | | |||| | || | | ||| |||||| | ||| || Sbjct 53111 AGAAAAATCAAGCA--AACCGAACGTTCAACTCACTGTTAACGGTGAAAAGAAATTGTTC 53054 Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||||||||||| | |||||||| | |||||||| |||||||| ||||| ||| Sbjct 53053 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTAT 52994 Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648 || || || ||| | |||| || | || || || || ||||| || ||||| || Sbjct 52993 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCTGCTTATTTCAACGATGCACAA 52934 Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708 ||| || || |||||||| |||| |||||| || | ||||| | |||| ||||| Sbjct 52933 CGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTAGTTCGAATCATTAAC 52874 Query 349709 GAACC 349713 ||||| Sbjct 52873 GAACC 52869 Score = 134 bits (148), Expect = 4e-26 Identities = 411/630 (65%), Gaps = 14/630 (2%) Strand=Plus/Minus Query 350181 ATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTG 350240 ||||||| || | || |||||| || || ||||| ||||| ||||| || || | Sbjct 52198 ATGAAGTTGTACTGGTCGGTGGTAGCACTCGCATTCCCAAAGTGCAACAATTGCTGAAGG 52139 Query 350241 AGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATG 350300 | ||||| || || ||||| || | | |||||||| || ||||||||||| || | Sbjct 52138 AATTTTTCAACGGAAAAGAGCCCAGTCGTGGTATTAATCCTGACGAAGCTGTTGCCTACG 52079 Query 350301 GTGCTGCTGTTCAGGCATCTATTTTATCTGGA-AATAAGAGTTCTAAAATTGATGATCTA 350359 ||||||| || || || | | ||||| || |||| | || |||||| Sbjct 52078 GTGCTGCGGTACAAGCTGGCGTAATTTCTGGTGAAGAAGAT-------ACTGGTGATCTT 52026 Query 350360 TTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACT 350419 | || | ||||| | ||| | | | ||| | |||||| || | ||| ||||| Sbjct 52025 GTGCTGTTGGATGTCAATCCGTTGACTTTGGGAATTGAAACTGTCGGCGGAGTGATGACG 51966 Query 350420 GTTCTTATTCCTAGAAATA--GTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACAT 350477 || ||||| || |||| ||| || || || || || || || | || || Sbjct 51965 AAACTGATTCCCAGGAATACGGTAGTG--CCGACCAAGAAATCGCAGATATTCAGCACCG 51908 Query 350478 TTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTA 350537 ||| || |||||||| |||| || |||||||| || ||||| ||||| | || | Sbjct 51907 CTGCCGACAATCAGCCCACGGTTACTATTCAAGTTTTCGAAGGCGAACGACCAATGACAA 51848 Query 350538 AAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAG 350597 |||| ||| | ||||| | || || | || || || || ||| | || | Sbjct 51847 AAGACAATCACCTTCTTGGCAAGTTCGATCTTACTGGCATACCTCCGGCTCCTCGCGGTG 51788 Query 350598 TTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAG 350657 | || || ||||||||| | |||||||||||| ||||||||||| | || ||||| | Sbjct 51787 TGCCACAAATTGAAGTCACATTCGATATTGATGTGAATGGTATTTTGCACGTCACCGCCG 51728 Query 350658 TTGAAAAATCAAGTGGTAAAAGTAGTAAGGTAGAAATTACTAATGATAAATCTAGACTTT 350717 || ||| | || || | | ||| | |||||| |||||| | | || | Sbjct 51727 AAGACAAAGGCACCGGAAACAAGAACAAGATCACAATTACCAATGATCACAACCGTCTGT 51668 Query 350718 CAAAAGAAGATATTGAGAAAATGACACAAGATGCCGAATCATATGCTAAGGAAGATGAAG 350777 || ||||||||||| |||| | |||||||| |||||| | || || ||| Sbjct 51667 CACCGGAAGATATTGACCGCATGATCAACGATGCCGAGAAATATGCAGAAGAGGA-CAAG 51609 Query 350778 AA-TTTAGAGAGCGTGTTAATTCTAAAAAT 350806 || || | ||| ||||| || | |||||| Sbjct 51608 AAGTTGAAAGAACGTGTGGATGCGAAAAAT 51579 Score = 102 bits (112), Expect = 2e-16 Identities = 410/642 (64%), Gaps = 18/642 (3%) Strand=Plus/Plus Query 182752 CTTCAAGATTATTTTTAGCCTCAATACTTCCTTTAAATTCCTCATCTTCTTTAGCATACT 182811 |||| || | |||||| || || | || | |||| || | || || |||| ||||| | Sbjct 51569 CTTCGAGTTCATTTTTCGCATCCACACGTTCTTTCAACTTCTTGTCCTCTTCTGCATATT 51628 Query 182812 TTTCAGCATCCATTGTCATTCTTTCTATTTCATCTTTAGAAAGATGACCTGCATCATTTG 182871 | || ||||| | |||| | || || || || || ||| | |||||| | Sbjct 51629 TCTCGGCATCGTTGATCATGCGGTCAATATCTTCCGGTGACAGACGGTTGTGATCATTGG 51688 Query 182872 TAATTACTACATTA--CTAGTTACTCCAGTTGATTTTTCAAGTGCGCTAACATTTAAAAT 182929 ||||| | || || ||| ||| || ||| || ||| | || | ||||| Sbjct 51689 TAATTGTGATCTTGTTCTTGTT--TCCGGTGCCTTTGTCTTCGGCGGTGACGTGCAAAAT 51746 Query 182930 ACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGTGG 182989 |||||| |||| ||| |||| |||||||| ||||| ||||| || || || || Sbjct 51747 ACCATTCACATCAATATCGAATGTGACTTCAATTTGTGGCACACCGCGAGGAGCCGGAGG 51806 Query 182990 AATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTTGCTCTCTCGCC 183049 || ||||| | | || | || | | ||| ||||| || ||| || ||||| Sbjct 51807 TATGCCAGTAAGATCGAACTTGCCAAGAAGGTGATTGTCTTTTGTCATTGGTCGTTCGCC 51866 Query 183050 TTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACTTGCTT 183109 ||| | |||||||||||||| | |||||||| || | || || | ||| Sbjct 51867 TTCGAAAACTTGAATAGTAACCGTGGGCTGATTGTCGGCAGCGGTGCTGAATATCTGCGA 51926 Query 183110 TTTATTAATAGGAATAGTTGAATTTCGCGGAA-CAATTACAGTCATTACTTCTCTGGCAG 183168 ||| || | || | | ||| | |||| || || | ||||| ||| | | | ||| Sbjct 51927 TTTCTTGGTCGGCACTACCGTATTCCTGGGAATCAGTTTC-GTCATCACTCCGCCGACAG 51985 Query 183169 TTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTTATCTG 183228 |||| | ||| || | || || ||||| | | | | ||| || | ||| Sbjct 51986 TTTCAATTCCCAAAGTCAACGGATTGACATCCAACAGCACAAGATCACCAGTATCTTCT- 52044 Query 183229 ATTTAATATCACTTAAAATTGC---AGCTTGAACAGCTGCACCATATGCAACAGCTTCAT 183285 |||| ||||| | |||||| || || ||||| || ||||||||||| | Sbjct 52045 --------TCACCAGAAATTACGCCAGCTTGTACCGCAGCACCGTAGGCAACAGCTTCGT 52096 Query 183286 CTGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAA 183345 | || ||||| |||| ||||| || || |||||||| |||| |||||| | Sbjct 52097 CAGGATTAATACCACGACTGGGCTCTTTTCCGTTGAAAAATTCCTTCAGCAATTGTTGCA 52156 Query 183346 TTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCAT 183387 ||| ||||| | ||| ||||||||| | ||| ||||||| Sbjct 52157 CTTTGGGAATGCGAGTGCTACCACCGACCAGTACAACTTCAT 52198 >seq1852 Length=8990 Score = 154 bits (170), Expect = 4e-32 Identities = 120/143 (84%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 6524 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 6465 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| ||||| | ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 6464 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6405 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | |||||| |||||||||||||| Sbjct 6404 AATGTTTTCACAAAAATCTGCAT 6382 Score = 145 bits (160), Expect = 2e-29 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 6237 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 6178 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||| | ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 6177 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6118 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | |||||| |||||||||||||| Sbjct 6117 AATGTTTTCACAAAAATCTGCAT 6095 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||||| | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| || || | || |||||||||||||| ||||| | || ||||| || Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 5685 AGAGTCTTCACGAATATCTGCAT 5663 >seq833 Length=82521 Score = 154 bits (170), Expect = 4e-32 Identities = 120/143 (84%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 80674 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 80615 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| ||||| | ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 80614 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80555 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | |||||| |||||||||||||| Sbjct 80554 AATGTTTTCACAAAAATCTGCAT 80532 Score = 145 bits (160), Expect = 2e-29 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 80387 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 80328 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||| | ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 80327 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80268 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | |||||| |||||||||||||| Sbjct 80267 AATGTTTTCACAAAAATCTGCAT 80245 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||||| | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| || || | || |||||||||||||| ||||| | || ||||| || Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 79835 AGAGTCTTCACGAATATCTGCAT 79813 >seq684 Length=410242 Score = 138 bits (152), Expect = 3e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || ||||| || ||||| || ||||| || |||||||| |||||||||||||||||| Sbjct 339564 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 339623 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| ||||| || || || ||||| ||||| || |||| || || || || Sbjct 339624 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 339683 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 339684 AGAGTTTTCACAAATATCTGCATT 339707 Score = 136 bits (150), Expect = 1e-26 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 140584 CTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTAT 140643 || || ||| || |||||||| || ||||| |||||||| || |||||||||||||||| Sbjct 367996 CTGCAGGTTACTTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTAT 368055 Query 140644 CCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTG 140703 ||||||||||| | || ||||| ||||| | || || | ||| ||||| || |||| | Sbjct 368056 CCTGAATTTTACCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGG 368115 Query 140704 TCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || ||||| ||||| ||||||||| Sbjct 368116 TTTTCCCAGTGAGAGTTTTCACAAATATCTGCATT 368150 Score = 127 bits (140), Expect = 6e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||| || ||||||||||||||||| ||||||||| Sbjct 337744 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTA 337803 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| || || | ||||||||||| ||||| | || | || || || || Sbjct 337804 CCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 337863 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || ||||| ||||| Sbjct 337864 AGCGTTTTAACGAAAATTTGCAT 337886 Score = 127 bits (140), Expect = 6e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || ||||||||||||||||| || ||||| || Sbjct 366756 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366815 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || || || || Sbjct 366816 TTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGC 366875 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||| ||||| Sbjct 366876 GTTTTAACGAAAATTTGCAT 366895 Score = 123 bits (136), Expect = 8e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | ||| |||||||| || ||||||||||||||||| || ||||| || Sbjct 366471 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366530 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| |||||||| ||||| | || | ||||| || || || Sbjct 366531 TTTACATTTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGA 366590 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 366591 GTCTTAACGAAAATTTGCATT 366611 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | ||| |||||||| || ||||||||||||||||| || ||||| || Sbjct 366184 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366243 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || || || || Sbjct 366244 TTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGC 366303 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||| ||||| Sbjct 366304 GTTTTAACGAAAATTTGCAT 366323 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||| ||||| || |||||||| |||||||| ||||||||| Sbjct 338028 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 338087 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||| | ||||| | |||||||||||| ||||| | || | || || || || Sbjct 338088 CCTTTCACAATTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTA 338147 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| ||||| Sbjct 338148 AGCGTCTTAACGAAAATTTGCAT 338170 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| || Sbjct 338312 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 338371 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| || || | || | || || || || || Sbjct 338372 TTTACATTCTCTATTGTATCAGATGGTTCGACCTCCAAAGTGATGGTTTTCCCAGTAAGC 338431 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || |||||||| ||||| Sbjct 338432 GTCTTAACAAAAATTTGCAT 338451 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || |||||||| |||||||| |||||||| || Sbjct 336894 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 336953 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | || |||||||| ||||| | || | || || || || || Sbjct 336954 TTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337013 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 337014 GTCTTAACGAAAATTTGCATT 337034 Score = 114 bits (126), Expect = 4e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 140591 TTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAAT 140650 ||| || |||||||| || | |||||||||||| || ||||||||||||||||| || || Sbjct 338588 TTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTAT 338647 Query 140651 TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCC 140710 ||| |||||||||| || || | || |||||||| ||||| | || | || || || Sbjct 338648 TTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCC 338707 Query 140711 GGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || || |||||| Sbjct 338708 AGTGAGGGTCTTAACGAATATTTGCATT 338735 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || ||||||||||||||||| || ||||| || Sbjct 367041 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 367100 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | || |||||||| ||||| | || | || || || || || Sbjct 367101 TTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 367160 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 367161 GTCTTAACGAAAATTTGCATT 367181 Score = 111 bits (122), Expect = 5e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || ||||||||||| ||||| || ||||| || Sbjct 337464 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGTATTTTGCCT 337523 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | || |||||||| ||||| | || | || || || || || Sbjct 337524 TTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337583 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 337584 GTCTTAACGAAAATTTGCATT 337604 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| || Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || |||||||| ||||| | || | || || || || || Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 337296 GTCTTAACGAAAATTTGCATT 337316 >seq185 Length=135723 Score = 105 bits (116), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 266916 AATGGAGATGGTTATAATTTTGCAAAAGTTCGTCTAAGAACATTACGCCAACCAGTA-AT 266974 |||| ||| || | || |||| ||||| ||| | | | ||||| | || | | || Sbjct 17927 AATGCAGACGGCAACAAGTTTGTCAAAGTGCGTGTGCGTTCGATACGC-ATCCCGCAGAT 17869 Query 266975 CGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCTGA 267034 |||||||||||| | ||||| ||||| || ||||| || ||||| | | | || | | Sbjct 17868 TGGCGATAAATTTGCCAGTCGTCACGGTCAGAAAGGCACTATTGGGATGGTATATCGTCA 17809 Query 267035 AGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGC 267094 ||| | |||||||| | || || || | ||| |||||||| || ||||| || || Sbjct 17808 AGAGGACATGCCATTCACGTGCGAAGGCATCACACCGGATATTATAATCAATCCACACGC 17749 Query 267095 TATTCCTAGTCGTATGACAATTGGTCAATT 267124 ||||||||||| ||||| |||||||| || Sbjct 17748 AATTCCTAGTCGAATGACCATTGGTCATTT 17719 >seq2180 Length=222558 Score = 98.7 bits (108), Expect = 3e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| || || |||||||||||||| ||||| | ||| | |||||| ||||| ||||| Sbjct 48861 CCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTGAATTGTATCAGAAGGTTCTACTTCC 48920 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | |||||||| ||||||||||| ||||| || ||||| Sbjct 48921 AAAGTGATGGTCTTTCCTGTTAGTGTTTTCACAAATATTTGCAT 48964 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| |||||||| ||||| | ||||| || ||||||||||| |||||||||||||| | Sbjct 48726 CTTTCTGAATATTGTAATCGGCCAATGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 48785 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | | ||||| |||||||| ||||| ||| Sbjct 48786 TCAATCGTTGTTGATCAGGTGGAATCCCT 48814 >seq2463 Length=168562 Score = 91.5 bits (100), Expect = 4e-13 Identities = 202/295 (68%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 223751 AATGTTAATCCAGGCATTAAACCTCTCTTTTTCATCCAAAATATTG-CGCAAAAAGCT-C 223808 || || || || ||||| | |||| |||||||| ||| || |||| ||| || ||| | Sbjct 100075 AAGGTCAAACCGGGCATCAGGCCTCGCTTTTTCAACCAGAAAATTGACGCGAA--GCTGC 100018 Query 223809 CTGaaaaaaaTATACCTTCTACACAAGCAAACGCTACTAATCGTGTTGCAAAATT-TGAA 223867 | ||||| || |||||||| ||| || ||||| || || ||| | | ||||| ||| Sbjct 100017 CGGAAAAGAAAATACCTTCAACAGCTGCGAACGCAACCAAACGT-TCGGAAAATGGTGAT 99959 Query 223868 TCTTTGTCTCCTATCCATTTTAATGCCCAATCTGCTTTTTTCTTAATACAAGAAAAATTT 223927 | ||| || ||||| || |||||||||||||||||||| | ||| | || || Sbjct 99958 TGGCGGTCACCGATCCAACGCAAAGCCCAATCTGCTTTTTTCTTCACACACGGAATCGTT 99899 Query 223928 TCTAAAGCATTAAAC--AACTTCGATTTCTCATTATGATCACTTATATATGTTTCTATTA 223985 || | || || ||| || || ||| |||||| || || || || || | Sbjct 99898 TCAATTGCGTTGAACAGAAAATC--ACGCTCCACCGGATCACGGATGTAGGTGTCAATCA 99841 Query 223986 ATTGACTATACATTATTGAATGTATATTTTCCATTGCTATTTGAAATCCATAAAA 224040 | || |||||| ||||| | |||||| || || ||||| || ||||| || Sbjct 99840 ACAAGCTGTACATTTCGGAATGGACATTTTCTATAGCAATTTGGAAGCCATAGAA 99786 >seq147 Length=144011 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206563 AATCCAATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATT 206622 || || || || || || | ||| || ||| | ||||||||||||||||| | || || Sbjct 30825 AAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTTAATGTGTCGTATATG 30766 Query 206623 CCATCAACACTATCACTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGC 206682 || || | || || || ||| | || | ||||||| || || ||||||| Sbjct 30765 CCTTCGATGCTGTCTGATTTCATCGTGATCAGAAAACAACTGCTCAACTGTGGTCTGCAT 30706 Query 206683 GTTCCAGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACATTAAATTA 206742 || || ||||| || | ||||| | ||| ||||| || |||||| ||||| |||||| Sbjct 30705 GTACCGGCATTGAACAGCGTAGGTGAAGCGTGTGTGAACCATTTTTCTGACATCAAATTA 30646 Query 206743 TAAGT 206747 ||||| Sbjct 30645 TAAGT 30641 >seq1440 Length=37008 Score = 84.2 bits (92), Expect = 7e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 266976 GGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCTGAA 267035 || || |||||| ||||||| || || |||||||||| || | | | |||| | Sbjct 4339 GGTGACAAATTTGCTAGTCGACATGGTCAAAAAGGTATCAATTCTTTTCTATGGCCTGCA 4280 Query 267036 GAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCT 267095 ||||| |||||||||| || ||||| ||||||||||| ||||||| |||| | Sbjct 4279 GAAAACATGCCATTTACGGAGTCGGGAATGGTCCCTGATATTATATTTAATCCACATGGT 4220 Query 267096 ATTCCTAGTCGTATGACAATTGGT 267119 |||| |||||||||| ||||| Sbjct 4219 TTTCCATCTCGTATGACAGTTGGT 4196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515205049111226