Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq147 91.5 2e-13 >seq147 Length=144011 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || || || ||||| ||||||| ||||| | ||||| | Sbjct 32758 GTTCTCAAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGAC 32699 Query 78250 GACAGCTTGGCCAGACTCGGGTTC-TCCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | || || | || | | ||| || | ||| || || | ||||||||| ||||| || Sbjct 32698 GTCAATTTAG-CATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGATTGGTCAAT 32640 Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 | | || || | ||||| |||||||| ||||| | ||||| | ||| ||||| Sbjct 32639 GAAAGCTCCCCTTTCGGCAGCCATGTCTATGACGCATTTTTGGGAAATTTCCCA 32586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507370624480