Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1825 89.7 6e-13 >seq1825 Length=902300 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || || ||||||| | ||||||||||| |||| || || || || || || || Sbjct 349198 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGG 349139 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | ||||| ||| ||| ||| |||||||| ||||||||||| | | Sbjct 349138 CCAATCGGCAGCAATATGTTGATGTTATTGCTGCCAACGAAATTATGAGCCAAATTTATA 349079 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || |||| | |||||| |||| || ||||| || || | || || || | | | || Sbjct 349078 ATGGTGCTCATCAGACTGACTTCGCCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCA 349019 Query 152209 GCCAACTGCGCCACCTTCA 152227 || | ||| || ||||||| Sbjct 349018 GCAAGCTGAGCGACCTTCA 349000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198612211600