Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq684 116 4e-21
seq1852 93.3 5e-14
seq833 93.3 5e-14
seq2463 91.5 2e-13
>seq684
Length=410242
Score = 116 bits (128), Expect = 4e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || || || || || || |||||||| || || || |
Sbjct 368150 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAAGCCTC 368091
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| |||| |||||| |||||||||||| || || |||||||| || || ||
Sbjct 368090 AGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCCGATCA 368031
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553
||||||||| || |||||||||||| |||
Sbjct 368030 GCAGCGTCTGATATTTGCTGGTAAGTAAC 368002
Score = 113 bits (124), Expect = 5e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||| ||||||||||| || || || || ||| | ||||| || || |
Sbjct 338451 ATGCAAATTTTTGTTAAGACGCTTACTGGGAAAACCATCACTTTGGAGGTCGAACCATCT 338392
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| |||
Sbjct 338391 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 338332
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
|||||| | || ||||||||||
Sbjct 338331 CAGCGTTTGATATTTGCTGGTA 338310
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||||||||| || || || || || | || || || || |
Sbjct 338170 ATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 338111
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || | |||| | ||||||||| || || ||||||||||| || || ||
Sbjct 338110 GATACAATTGAAATTGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 338051
Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||| | |||||||||||||||
Sbjct 338050 CAACGTTTGATTTTTGCTGGTAAG 338027
Score = 102 bits (112), Expect = 9e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || |||||||| || || || || ||| | || || || || |
Sbjct 337886 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 337827
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| |||| | ||||||||| || || || |||||||| ||||| |||
Sbjct 337826 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 337767
Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||| | |||||||||||||||
Sbjct 337766 CAACGTTTGATTTTTGCTGGTAAG 337743
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| || || ||||| || || ||| | || || || ||
Sbjct 337316 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 337257
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | |||| |||| | ||||| ||||| || ||||||||||| ||||| ||
Sbjct 337256 CGACACAATAGAAAATGTGAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 337197
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||||||| | |||||||| ||||
Sbjct 337196 GCAGCGTTTGATTTTTGCCGGTA 337174
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || || || || || || |||||||| || || || |
Sbjct 339707 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 339648
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| |||| |||| | || | |||||||||||| || ||||||||||| || || ||
Sbjct 339647 AGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 339588
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|||||||| |||||||| |||||| ||
Sbjct 339587 ACAGCGTCTCATTTTTGCAGGTAAGTAA 339560
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| || || ||||| || || ||| | || || || ||
Sbjct 338735 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 338676
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | |||| | || | ||||| || || || || |||||||| ||||| ||
Sbjct 338675 CGACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 338616
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
||| ||| | || |||||||||||||||
Sbjct 338615 GCAACGTTTGATATTTGCTGGTAAGCAA 338588
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| |||||| | || || || || ||||| || || |||||| |
Sbjct 339365 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 339306
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || | || ||| ||||| ||||| || || || |||||||| ||
Sbjct 339305 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 339246
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| || |||||||||||||
Sbjct 339245 CAGCGGCTTATTTTTGCTGGTA 339224
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| |||||| | || || || || ||||| || || |||||| |
Sbjct 367808 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 367749
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || | || ||| ||||| ||||| || || || |||||||| ||
Sbjct 367748 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 367689
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| || |||||||||||||
Sbjct 367688 CAGCGACTTATTTTTGCTGGTA 367667
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| || || ||||| || || ||| | || || || ||
Sbjct 337034 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATC 336975
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | ||| | || | |||||||| || || ||||||||||| ||||| ||
Sbjct 336974 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 336915
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| ||| | || ||||||||||
Sbjct 336914 GCAACGTTTGATATTTGCTGGTA 336892
>seq1852
Length=8990
Score = 93.3 bits (102), Expect = 5e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| || || || ||||| ||||| || || ||||| || || || ||||| ||
Sbjct 5660 ATTATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 5719
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | |||| | || |||||||||||| ||||| || |||||||| ||
Sbjct 5720 TCAGACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 5779
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548
||||| | |||| ||||| |||||
Sbjct 5780 CAGCAAAGATTAATCTTTGCAGGTAA 5805
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || || | || || || || || || | || || ||| || |
Sbjct 6095 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 6154
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| |||||| ||||||||| || ||||| || ||||| || || |||
Sbjct 6155 GATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 6214
Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548
|| || | || |||||||||||
Sbjct 6215 CAACGATTGATATTTGCTGGTAA 6237
Score = 82.4 bits (90), Expect = 9e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || || | || || || || || || | || || ||| || |
Sbjct 6382 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 6441
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| |||| | ||||||||| || || || || ||||| || || |||
Sbjct 6442 GATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCAG 6501
Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548
|| || | || |||||||||||
Sbjct 6502 CAACGATTGATATTTGCTGGTAA 6524
>seq833
Length=82521
Score = 93.3 bits (102), Expect = 5e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| || || || ||||| ||||| || || ||||| || || || ||||| ||
Sbjct 79810 ATTATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 79869
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | |||| | || |||||||||||| ||||| || |||||||| ||
Sbjct 79870 TCAGACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 79929
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548
||||| | |||| ||||| |||||
Sbjct 79930 CAGCAAAGATTAATCTTTGCAGGTAA 79955
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || || | || || || || || || | || || ||| || |
Sbjct 80245 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 80304
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| |||||| ||||||||| || ||||| || ||||| || || |||
Sbjct 80305 GATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 80364
Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548
|| || | || |||||||||||
Sbjct 80365 CAACGATTGATATTTGCTGGTAA 80387
Score = 82.4 bits (90), Expect = 9e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || || | || || || || || || | || || ||| || |
Sbjct 80532 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 80591
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| |||| | ||||||||| || || || || ||||| || || |||
Sbjct 80592 GATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCAG 80651
Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548
|| || | || |||||||||||
Sbjct 80652 CAACGATTGATATTTGCTGGTAA 80674
>seq2463
Length=168562
Score = 91.5 bits (100), Expect = 2e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796
||| ||||| ||||||||||| || ||| || ||||||||| | |||||||| ||
Sbjct 99995 TGTTGAAGGTATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGAGG 100054
Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGG 64846
||||||||| ||| || | || |||||| |||||||||| |||||||
Sbjct 100055 CCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGATCTCTCGTGACGAGG 100104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570292278387040
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