Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq684 123 2e-23
seq1852 87.8 2e-12
seq833 87.8 2e-12
>seq684
Length=410242
Score = 123 bits (136), Expect = 2e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| |||||||| || || || | |||||||| ||||||||||| ||
Sbjct 339706 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 339647
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||||| ||||| | || ||| |||||||| || ||||| || || ||||||||||||
Sbjct 339646 GACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 339587
Query 27108 CAGCGT 27113
||||||
Sbjct 339586 CAGCGT 339581
Score = 114 bits (126), Expect = 1e-20
Identities = 105/133 (79%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| |||||||| || || || | |||||||| ||||||||| | ||
Sbjct 368149 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAAGCCTCA 368090
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || |||||||| || |||||||| || |||||||||||
Sbjct 368089 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCCGATCAG 368030
Query 27108 CAGCGTTTAATAT 27120
|||||| | ||||
Sbjct 368029 CAGCGTCTGATAT 368017
Score = 105 bits (116), Expect = 6e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || ||||| || |||||| | || ||| | ||||||||||| |||
Sbjct 366610 ATGCAAATTTTCGTTAAGACTCTTACTGGCAAGACCATCACTTTGGAAGTGGAACCATCC 366551
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| ||||| ||||| |||||||| || ||||| |||||
Sbjct 366550 GATACAATTGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366491
Query 27108 CAGCGTTTAATAT 27120
|||||||| ||||
Sbjct 366490 CAGCGTTTGATAT 366478
Score = 104 bits (114), Expect = 2e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| || || |||| || || | ||||| || ||||| || |||||
Sbjct 339365 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 339306
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || ||| || |||||||||||||||||||| || || ||||||
Sbjct 339305 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 339246
Query 27108 CAGCG 27112
|||||
Sbjct 339245 CAGCG 339241
Score = 104 bits (114), Expect = 2e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| || || |||| || || | ||||| || ||||| || |||||
Sbjct 367808 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 367749
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || ||| || |||||||||||||||||||| || || ||||||
Sbjct 367748 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 367689
Query 27108 CAGCG 27112
|||||
Sbjct 367688 CAGCG 367684
Score = 102 bits (112), Expect = 7e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| ||||| || || || || || ||||| | || ||| | ||||||||||| |||
Sbjct 338734 ATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 338675
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || ||| ||||| ||||| |||||||| || ||||| |||||
Sbjct 338674 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 338615
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATT 27136
|| ||||| |||| || || || |||||
Sbjct 338614 CAACGTTTGATATTTGCTGGTAAGCAATT 338586
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || || ||||| | || ||| | ||||||||||| |||
Sbjct 367180 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 367121
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || ||| ||||| ||||| |||||||| || ||||| |||||
Sbjct 367120 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 367061
Query 27108 CAGCGTTTAATAT 27120
|| ||||| ||||
Sbjct 367060 CAACGTTTGATAT 367048
Score = 95.1 bits (104), Expect = 1e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || ||||| || || || || | || ||| | ||||||||||| ||
Sbjct 337887 CATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATC 337828
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || |||| || ||| ||||||||||| |||||||| || ||||| |||||
Sbjct 337827 TGACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 337768
Query 27107 ACAGCGTTTAAT 27118
|| ||||| ||
Sbjct 337767 GCAACGTTTGAT 337756
Score = 91.5 bits (100), Expect = 1e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || || ||||| | || ||| | ||||| ||||| |||
Sbjct 337033 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCC 336974
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || ||| ||||||||||| ||||| || || ||||| |||||
Sbjct 336973 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 336914
Query 27108 CAGCGTTTAATAT 27120
|| ||||| ||||
Sbjct 336913 CAACGTTTGATAT 336901
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || || ||||| | || ||| | ||||||||||| |||
Sbjct 337315 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 337256
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || ||| ||||| || || ||||| || || ||||| |||||
Sbjct 337255 GACACAATAGAAAATGTGAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 337196
Query 27108 CAGCGTTTAATATACGCCGG 27127
|||||||| || | |||||
Sbjct 337195 CAGCGTTTGATTTTTGCCGG 337176
Score = 86.0 bits (94), Expect = 5e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || || || || || || || | || || | ||||||||||| ||
Sbjct 338171 CATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATC 338112
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | ||||| || || ||| ||||||||||| ||||| || || ||||| |||||
Sbjct 338111 TGATACAATTGAAATTGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 338052
Query 27107 ACAGCGTTTAAT 27118
||| ||||| ||
Sbjct 338051 ACAACGTTTGAT 338040
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || ||||| || || || || | || || | ||||||||||| ||
Sbjct 366324 CATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATC 366265
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | || || | || ||| ||||| ||||| |||||||| || ||||| |||||
Sbjct 366264 TGATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 366205
Query 27107 ACAGCGTTTAATAT 27120
|||||||| ||||
Sbjct 366204 GCAGCGTTTGATAT 366191
>seq1852
Length=8990
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||||||| || || ||||| || || || |||| || || ||||| ||||| ||
Sbjct 5663 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 5722
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| |||||||| || || |||||||| || || |||||
Sbjct 5723 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 5782
Query 27108 CAGCGTTTAAT 27118
|| | |||||
Sbjct 5783 CAAAGATTAAT 5793
>seq833
Length=82521
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||||||| || || ||||| || || || |||| || || ||||| ||||| ||
Sbjct 79813 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 79872
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| |||||||| || || |||||||| || || |||||
Sbjct 79873 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 79932
Query 27108 CAGCGTTTAAT 27118
|| | |||||
Sbjct 79933 CAAAGATTAAT 79943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434904580467840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |