Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq684 123 2e-23 seq1852 87.8 2e-12 seq833 87.8 2e-12 >seq684 Length=410242 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||||| || || || | |||||||| ||||||||||| || Sbjct 339706 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 339647 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || ||| |||||||| || ||||| || || |||||||||||| Sbjct 339646 GACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 339587 Query 27108 CAGCGT 27113 |||||| Sbjct 339586 CAGCGT 339581 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||||| || || || | |||||||| ||||||||| | || Sbjct 368149 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAAGCCTCA 368090 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| || |||||||| || ||||||||||| Sbjct 368089 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCCGATCAG 368030 Query 27108 CAGCGTTTAATAT 27120 |||||| | |||| Sbjct 368029 CAGCGTCTGATAT 368017 Score = 105 bits (116), Expect = 6e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || |||||| | || ||| | ||||||||||| ||| Sbjct 366610 ATGCAAATTTTCGTTAAGACTCTTACTGGCAAGACCATCACTTTGGAAGTGGAACCATCC 366551 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 366550 GATACAATTGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366491 Query 27108 CAGCGTTTAATAT 27120 |||||||| |||| Sbjct 366490 CAGCGTTTGATAT 366478 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || |||| || || | ||||| || ||||| || ||||| Sbjct 339365 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 339306 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || |||||||||||||||||||| || || |||||| Sbjct 339305 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 339246 Query 27108 CAGCG 27112 ||||| Sbjct 339245 CAGCG 339241 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || |||| || || | ||||| || ||||| || ||||| Sbjct 367808 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 367749 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || |||||||||||||||||||| || || |||||| Sbjct 367748 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 367689 Query 27108 CAGCG 27112 ||||| Sbjct 367688 CAGCG 367684 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || || ||||| | || ||| | ||||||||||| ||| Sbjct 338734 ATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 338675 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 338674 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 338615 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATT 27136 || ||||| |||| || || || ||||| Sbjct 338614 CAACGTTTGATATTTGCTGGTAAGCAATT 338586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || ||| | ||||||||||| ||| Sbjct 367180 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 367121 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 367120 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 367061 Query 27108 CAGCGTTTAATAT 27120 || ||||| |||| Sbjct 367060 CAACGTTTGATAT 367048 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || || || || | || ||| | ||||||||||| || Sbjct 337887 CATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATC 337828 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 337827 TGACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 337768 Query 27107 ACAGCGTTTAAT 27118 || ||||| || Sbjct 337767 GCAACGTTTGAT 337756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || ||| | ||||| ||||| ||| Sbjct 337033 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCC 336974 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||||||||| ||||| || || ||||| ||||| Sbjct 336973 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 336914 Query 27108 CAGCGTTTAATAT 27120 || ||||| |||| Sbjct 336913 CAACGTTTGATAT 336901 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || ||| | ||||||||||| ||| Sbjct 337315 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 337256 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||| || || ||||| || || ||||| ||||| Sbjct 337255 GACACAATAGAAAATGTGAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 337196 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||||| || | ||||| Sbjct 337195 CAGCGTTTGATTTTTGCCGG 337176 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || || || | || || | ||||||||||| || Sbjct 338171 CATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATC 338112 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| || || ||| ||||||||||| ||||| || || ||||| ||||| Sbjct 338111 TGATACAATTGAAATTGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 338052 Query 27107 ACAGCGTTTAAT 27118 ||| ||||| || Sbjct 338051 ACAACGTTTGAT 338040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || || || || | || || | ||||||||||| || Sbjct 366324 CATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATC 366265 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || ||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 366264 TGATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 366205 Query 27107 ACAGCGTTTAATAT 27120 |||||||| |||| Sbjct 366204 GCAGCGTTTGATAT 366191 >seq1852 Length=8990 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || ||||| || || || |||| || || ||||| ||||| || Sbjct 5663 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 5722 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||||| || || |||||||| || || ||||| Sbjct 5723 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 5782 Query 27108 CAGCGTTTAAT 27118 || | ||||| Sbjct 5783 CAAAGATTAAT 5793 >seq833 Length=82521 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || ||||| || || || |||| || || ||||| ||||| || Sbjct 79813 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 79872 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||||| || || |||||||| || || ||||| Sbjct 79873 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 79932 Query 27108 CAGCGTTTAAT 27118 || | ||||| Sbjct 79933 CAAAGATTAAT 79943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434904580467840