Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq684 96.9 2e-15 seq1852 84.2 2e-11 seq833 84.2 2e-11 >seq684 Length=410242 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 27919 ATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAA 27978 || ||| | || ||||||||||| || | ||| | ||||||||||| ||||| || ||| Sbjct 367907 ATGTTTTCAGGCAAACAATTGGAAGATGGACGTACTTTGTCCGATTATAACATTCAGAAA 367848 Query 27979 GAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| | || |||||||||||||||||||| || Sbjct 367847 GAGAGCACGCTTCACTTGGTTTTGCGTTTGCGTGGTGG 367810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| || | ||| | ||||||||||| ||||| || |||||| Sbjct 339461 TTTTCAGGCAAACAGTTGGAAGATGGACGTACATTGTCCGATTATAACATTCAGAAAGAG 339402 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || |||||||||||||||||||| || Sbjct 339401 AGCACGCTTCACTTGGTTTTGCGTTTGCGTGGTGG 339367 >seq1852 Length=8990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || | ||||| ||||||||||| || ||||| || ||| Sbjct 6292 GGGAAACAACTGGAAGATGGTCGTACATTGTCTGATTACAACATTCAGAAAGAAAGTACT 6351 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 6352 TTGCATTTGGTGCTGCGTTTACGTGGCGG 6380 >seq833 Length=82521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || | ||||| ||||||||||| || ||||| || ||| Sbjct 80442 GGGAAACAACTGGAAGATGGTCGTACATTGTCTGATTACAACATTCAGAAAGAAAGTACT 80501 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 80502 TTGCATTTGGTGCTGCGTTTACGTGGCGG 80530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355851375160434