Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq684 93.3 3e-14
>seq684
Length=410242
Score = 93.3 bits (102), Expect = 3e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || | |
Sbjct 337034 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATC 336975
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | ||||| |||||| || ||||| || | || ||||||||
Sbjct 336974 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 336915
Query 23730 ACAGCGTTTAATATTTGCCGG 23750
|| ||||| |||||||| ||
Sbjct 336914 GCAACGTTTGATATTTGCTGG 336894
Score = 93.3 bits (102), Expect = 3e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || | |
Sbjct 337316 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 337257
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | |||| | ||| ||||| || ||||| || | || ||||||||
Sbjct 337256 CGACACAATAGAAAATGTGAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 337197
Query 23730 ACAGCGTTTAATATTTGCCGG 23750
|||||||| || ||||||||
Sbjct 337196 GCAGCGTTTGATTTTTGCCGG 337176
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || ||||| ||||| || ||||| || ||||| ||||| || ||
Sbjct 339709 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCC 339650
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||| | |||||| ||||| |||||| || ||||| || | || || |||
Sbjct 339649 TCAGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 339590
Query 23728 CAACAGCGTTTAATATTTGCCGGCAA 23753
||||||||| | || ||||| || ||
Sbjct 339589 CAACAGCGTCTCATTTTTGCAGGTAA 339564
Score = 93.3 bits (102), Expect = 3e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || | |
Sbjct 367181 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 367122
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | ||||| ||||| || |||||||| | || ||||||||
Sbjct 367121 CGACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 367062
Query 23730 ACAGCGTTTAATATTTGCCGG 23750
|| ||||| |||||||| ||
Sbjct 367061 GCAACGTTTGATATTTGCTGG 367041
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || ||||| ||||| || ||||| || ||||| ||||| || ||
Sbjct 368152 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAAGCC 368093
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||||| | || |||||| || |||||||| | || || |||
Sbjct 368092 TCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCCGAT 368033
Query 23728 CAACAGCGTTTAATATTTGCCGGCAA 23753
|| |||||| | |||||||| || ||
Sbjct 368032 CAGCAGCGTCTGATATTTGCTGGTAA 368007
Score = 87.8 bits (96), Expect = 1e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||||||||| |||||||| || ||||| |||||| | ||||| || | |
Sbjct 337604 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATC 337545
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | ||||| ||||| || || ||||| | || ||||||||
Sbjct 337544 CGACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAGGAAGGAATTCCACCAGATCA 337485
Query 23730 ACAGCGTTTAATATTTGCCGG 23750
|| ||||| |||||||| ||
Sbjct 337484 GCAACGTTTGATATTTGCTGG 337464
Score = 87.8 bits (96), Expect = 1e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||||||||| || || || || || || |||||| | ||||| || | |
Sbjct 366611 AATGCAAATTTTCGTTAAGACTCTTACTGGCAAGACCATCACTTTGGAAGTGGAACCATC 366552
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||||| ||||| ||||| || |||||||| | || ||||||||
Sbjct 366551 CGATACAATTGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 366492
Query 23730 ACAGCGTTTAATATTTGCCGG 23750
|||||||| |||||||| ||
Sbjct 366491 GCAGCGTTTGATATTTGCTGG 366471
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||||||||| || || || ||||| ||||| | ||||| || | |
Sbjct 366323 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 366264
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| ||||| ||||| || |||||||| | || ||||||||
Sbjct 366263 GATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366204
Query 23731 CAGCGTTTAATATTTGCCGG 23750
|||||||| |||||||| ||
Sbjct 366203 CAGCGTTTGATATTTGCTGG 366184
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||||||||| || || || ||||| |||||| | ||||| || | |
Sbjct 337886 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 337827
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | ||| |||||| || |||||||| | || ||||||||
Sbjct 337826 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 337767
Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753
|| ||||| || ||||| || ||
Sbjct 337766 CAACGTTTGATTTTTGCTGGTAA 337744
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||||||||| || || || ||||| ||||| | ||||| || | |
Sbjct 366895 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 366836
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| ||||| ||||| || |||||||| | || ||||||||
Sbjct 366835 GATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366776
Query 23731 CAGCGTTTAATATTTGCCGG 23750
|| ||||| |||||||| ||
Sbjct 366775 CAACGTTTGATATTTGCTGG 366756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337999128251336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |