Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq2463 109 5e-19
>seq2463
Length=168562
Score = 109 bits (120), Expect = 5e-19
Identities = 230/340 (68%), Gaps = 10/340 (3%)
Strand=Plus/Minus
Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658
|| || || |||||||| | |||| |||||| | ||| || || | || || ||
Sbjct 100075 AAGGTCAAACCGGGCATCAGGCCTCGCTTTTTCAACCAGAAAATTGACGCGAAGCTGCCG 100016
Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718
|||||||| || ||||| || || || ||||| || || || | ||| | || |
Sbjct 100015 GAAAAGAAAATACCTTCAACAGCTGCGAACGCAACCAAACGTT--CGGAAAATGGTGATT 99958
Query 4719 TT--GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGT 4776
||| ||||| || ||||| | ||||||||||| || |||||||| || |
Sbjct 99957 GGCGGTCACCGATCCAACGCAAAGCCCAATCTGCTTTTTTCTTCACACACGGAATCGTTT 99898
Query 4777 ATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTA 4833
|| ||||| || | | | || | | | || || | || || ||||| || |
Sbjct 99897 CAATTGCGTTGAACAGAAAATCACGCT---CCACCGGATCACGGATGTAGGTGTCAATCA 99841
Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATC 4893
| ||| |||||||| ||||| | ||||||||||||||| || || || || ||| | |
Sbjct 99840 ACAAGCTGTACATTTCGGAATGGACATTTTCTATAGCAATTTGGAAGCCATAGAAGAAAC 99781
Query 4894 TAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933
||||| || ||||||| ||| | | |||||| ||| ||
Sbjct 99780 GTGCTTCGGTCACTTGAATTTCTTGAGAAAATCGTTCCAC 99741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427036369736486
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |