Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2463 109 5e-19 >seq2463 Length=168562 Score = 109 bits (120), Expect = 5e-19 Identities = 230/340 (68%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || || |||||||| | |||| |||||| | ||| || || | || || || Sbjct 100075 AAGGTCAAACCGGGCATCAGGCCTCGCTTTTTCAACCAGAAAATTGACGCGAAGCTGCCG 100016 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 |||||||| || ||||| || || || ||||| || || || | ||| | || | Sbjct 100015 GAAAAGAAAATACCTTCAACAGCTGCGAACGCAACCAAACGTT--CGGAAAATGGTGATT 99958 Query 4719 TT--GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGT 4776 ||| ||||| || ||||| | ||||||||||| || |||||||| || | Sbjct 99957 GGCGGTCACCGATCCAACGCAAAGCCCAATCTGCTTTTTTCTTCACACACGGAATCGTTT 99898 Query 4777 ATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTA 4833 || ||||| || | | | || | | | || || | || || ||||| || | Sbjct 99897 CAATTGCGTTGAACAGAAAATCACGCT---CCACCGGATCACGGATGTAGGTGTCAATCA 99841 Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATC 4893 | ||| |||||||| ||||| | ||||||||||||||| || || || || ||| | | Sbjct 99840 ACAAGCTGTACATTTCGGAATGGACATTTTCTATAGCAATTTGGAAGCCATAGAAGAAAC 99781 Query 4894 TAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 ||||| || ||||||| ||| | | |||||| ||| || Sbjct 99780 GTGCTTCGGTCACTTGAATTTCTTGAGAAAATCGTTCCAC 99741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427036369736486