Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq147 131 2e-25 >seq147 Length=144011 Score = 131 bits (144), Expect = 2e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||| ||||| ||||| | ||| ||||||| || ||||||| |||||||||| ||| Sbjct 31313 TTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCACATCAGTGA 31254 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || || || | | || || ||||| || |||||||||||||| || || ||| Sbjct 31253 CCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGGGCGTAAAA 31194 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 | ||||| || ||| | |||||| | ||||| |||||||| || ||||| || | Sbjct 31193 CAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 31134 Query 78104 AATATCAGAATGCCATGGTTCTAGATA 78130 || || | ||||| ||||| | ||| Sbjct 31133 TATGTCTGCGTGCCAAGGTTCCAAATA 31107 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||||| || || ||||| | | ||| || || || | | ||||||||| ||| Sbjct 32797 TTATCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 32738 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| ||||| |||| |||||||||||||| |||| ||| | ||| | || Sbjct 32737 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 32678 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 ||||| || |||||||||| |||||| ||| || ||||||||||| || || || ||| Sbjct 32677 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCC 32618 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 76994 || | ||| | | ||||| | ||||||||||| || ||| Sbjct 32617 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 32576 Score = 105 bits (116), Expect = 9e-18 Identities = 191/273 (70%), Gaps = 10/273 (4%) Strand=Plus/Minus Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343 ||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || | Sbjct 32155 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 32096 Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402 ||||||| ||| || | ||| || || || || || |||||| || | || || Sbjct 32095 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTT-GCCAAATCGCAG 32037 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459 || ||| || || | ||||| || ||||| ||||| |||||||| | |||| | | Sbjct 32036 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 31977 Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 |||| || ||||||||||| | | | ||| || ||||| || || || || || Sbjct 31976 TCTTCGGAT----TCAAACGGATATCGCATCAAAATGAAAGCATCCGCCAACCCTTGCAC 31921 Query 77519 TCCAATACCAATAGGTCTATGTCTCTTATTGGA 77551 ||||||||||| |||| ||| | ||||| || Sbjct 31920 ACCAATACCAATTGGTCGATGACGTTTATTAGA 31888 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182 || |||||||||||| || | || | |||||| || | ||| || || | ||| || Sbjct 32372 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 32313 Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242 ||||||||||| ||||||||||| || || || ||||| ||||| ||||||| ||| || Sbjct 32312 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 32253 Query 77243 ACTATTTCTGAGACCAT 77259 ||||| ||||||| Sbjct 32252 CGAATTTCGCAGACCAT 32236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694646726898880