Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq147 131 2e-25
>seq147
Length=144011
Score = 131 bits (144), Expect = 2e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
||||||| ||||| ||||| | | |||||| || || | | ||||||||| |||
Sbjct 32797 TTATCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 32738
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||| ||||| |||| |||||||||||||| || | ||| | ||| | ||
Sbjct 32737 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 32678
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
||||| || |||||||||| |||||| ||| || ||||||||||| || || || |||
Sbjct 32677 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCC 32618
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589
|| | ||| | | ||||| | ||||||||||| || |||
Sbjct 32617 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 32576
Score = 120 bits (132), Expect = 4e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570
||||| |||||| ||||| ||||| | ||| |||| || |||||||||| || |||
Sbjct 31321 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCAC 31262
Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630
|||| |||||| || || || | | || || ||||| || |||||||||||||| ||
Sbjct 31261 ATCAGTGACCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGG 31202
Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690
|| ||| | ||||| || ||| |||||| | ||||| |||||||| || ||
Sbjct 31201 GCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGA 31142
Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731
|| || | || || | ||||| ||||| | ||| | |||
Sbjct 31141 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGC 31101
Score = 105 bits (116), Expect = 1e-17
Identities = 194/280 (69%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938
||| ||||||||| | ||| | || ||||| ||| | || ||||| ||||| || |
Sbjct 32155 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 32096
Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998
| ||||| ||| || | ||| || ||||| | || || || || | ||||| |
Sbjct 32095 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAGC 32036
Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCG- 76055
| ||||||||| | ||||| || ||||| ||||| |||||||| | |||| ||
Sbjct 32035 TGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTT 31976
Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115
|||| || | |||| ||||| | | | ||| || ||||| || | || || || |
Sbjct 31975 CTTCG-GATT--CAAACGGATATCGCATCAAAATGAAAGCATCCGCCAACCCTTGCACAC 31919
Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155
|||||||||| |||| ||| | ||||| || |||| ||
Sbjct 31918 CAATACCAATTGGTCGATGACGTTTATTAGACCTTTCTGC 31879
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
|||||||||||| || | || | ||||| || | ||| || || | ||| || ||
Sbjct 32369 TTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTACTGA 32310
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
||||||||| ||||||||||| || || || ||||||||||| ||||||| ||| ||
Sbjct 32309 TTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAACGA 32250
Query 75841 ATTTCTGAGACCAT 75854
||||| |||||||
Sbjct 32249 ATTTCGCAGACCAT 32236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712911746509440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |