Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1852 91.5 3e-13 seq833 91.5 3e-13 seq684 84.2 5e-11 >seq1852 Length=8990 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | || ||||| || | | || |||||||| || |||||||| Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| | || | | ||||||| || ||||| || || |||||||| || || Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 |||||||||||||| | |||||| Sbjct 5685 AGAGTCTTCACGAATATCTGCAT 5663 >seq833 Length=82521 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | || ||||| || | | || |||||||| || |||||||| Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| | || | | ||||||| || ||||| || || |||||||| || || Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 |||||||||||||| | |||||| Sbjct 79835 AGAGTCTTCACGAATATCTGCAT 79813 >seq684 Length=410242 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 151998 ATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACT 152057 ||||||||||| ||||| ||||| ||| ||| |||||| |||| || |||||| Sbjct 337497 ATTCCTTCCTTATCTTGTATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCTACT 337556 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || | ||| || |||||||| ||||| ||||| ||||| | |||||| |||| Sbjct 337557 TCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAAATTTGCATTCCACCC 337610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153783220777682