Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq684 102 2e-16
seq1852 91.5 3e-13
seq833 91.5 3e-13
>seq684
Length=410242
Score = 102 bits (112), Expect = 2e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009
|| ||| || || ||||| ||||||||||| || || ||||| || || || |||||
Sbjct 338585 TAATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 338644
Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069
|| || ||||||| | || || ||||| || | ||| ||||| | |||||| || ||
Sbjct 338645 TATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 338704
Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || | |||||||||||||| ||||||
Sbjct 338705 GCCAGTGAGGGTCTTAACGAATATTTGCATT 338735
Score = 96.9 bits (106), Expect = 7e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| ||||||||||| || || ||||| ||||| || ||||| || || ||
Sbjct 336894 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 336953
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || ||||| || | ||| ||||| | |||||| || || || || |
Sbjct 336954 TTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337013
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 337014 GTCTTAACGAAAATTTGCATT 337034
Score = 96.9 bits (106), Expect = 7e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| ||||||||||| || || ||||| || ||||| ||||| || || ||
Sbjct 337464 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGTATTTTGCCT 337523
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || ||||| || | ||| ||||| | |||||| || || || || |
Sbjct 337524 TTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337583
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 337584 GTCTTAACGAAAATTTGCATT 337604
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||||||| || || || ||||| || || || ||||| || || ||
Sbjct 366471 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366530
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||| ||||| || || | |
Sbjct 366531 TTTACATTTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGA 366590
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 366591 GTCTTAACGAAAATTTGCATT 366611
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| ||||||||||| || || ||||| || || || ||||| || || ||
Sbjct 367041 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 367100
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || ||||| || | ||| ||||| | |||||| || || || || |
Sbjct 367101 TTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 367160
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 367161 GTCTTAACGAAAATTTGCATT 367181
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|||||||| |||||||| || || || ||||| ||||| || || || || || ||
Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || || ||||| || | ||| ||||| | |||||| || || || || |
Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 337296 GTCTTAACGAAAATTTGCATT 337316
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||||||||||||| || ||||| ||||| || ||||| || ||
Sbjct 338028 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 338087
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|||| || | || || || || || | ||| ||||| | ||||| || || || ||
Sbjct 338088 CCTTTCACAATTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTA 338147
Query 283077 AAAGTCTTAACGAATATCTGCAT 283099
| ||||||||||| || |||||
Sbjct 338148 AGCGTCTTAACGAAAATTTGCAT 338170
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| || | ||| ||||| || ||||| ||||| || || || || ||
Sbjct 339564 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 339623
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||||| | || || | ||| || | ||| ||||| ||||| || || || || ||
Sbjct 339624 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 339683
Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103
| ||| || || |||||||||||||||
Sbjct 339684 AGAGTTTTCACAAATATCTGCATTTTC 339710
>seq1852
Length=8990
Score = 91.5 bits (100), Expect = 3e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| || | ||| || ||| ||||| || ||||| || || || |||
Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 5747
Query 283017 GCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
||||| || | ||||| ||||| || | ||| ||||| || || || || || || ||
Sbjct 5746 ACTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 5687
Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099
| |||||| ||||||||||||||
Sbjct 5686 AAGAGTCTTCACGAATATCTGCAT 5663
>seq833
Length=82521
Score = 91.5 bits (100), Expect = 3e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| || | ||| || ||| ||||| || ||||| || || || |||
Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 79897
Query 283017 GCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
||||| || | ||||| ||||| || | ||| ||||| || || || || || || ||
Sbjct 79896 ACTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 79837
Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099
| |||||| ||||||||||||||
Sbjct 79836 AAGAGTCTTCACGAATATCTGCAT 79813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046705108358468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |