Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2263 345 4e-90 seq511 327 1e-84 seq10 315 7e-81 seq1078 313 3e-80 seq2427 311 9e-80 >seq2263 Length=665 Score = 345 bits (382), Expect = 4e-90 Identities = 231/257 (90%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 434 TCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCA 375 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 374 CCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGC 315 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||| Sbjct 314 CCGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGACATGTTGG 255 Query 8524 CCAGGCTGGTCTCGAACTC----CTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAA 8579 ||||||||||||| ||||| ||||||||| |||||||||| |||| ||||||||||| Sbjct 254 CCAGGCTGGTCTCAAACTCACTACTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAA 195 Query 8580 GTGCTGGGATTACAGGC 8596 ||||||||||||||||| Sbjct 194 GTGCTGGGATTACAGGC 178 >seq511 Length=361 Score = 327 bits (362), Expect = 1e-84 Identities = 237/274 (86%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 32 TCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCA 91 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||| |||||||||| ||||| |||| |||| ||| ||||||||| ||||||||| Sbjct 92 TCTCCTGGGTTCAAGCAATTCTTCTGCTTCAGTGTCCTGAGTAGCTGAGATTACAGGTGT 151 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||| ||| ||| |||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 152 GTGCCGCCATGCCTGGCTATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGG 211 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 |||||||||||| ||||||||||||||| ||||||||||||| | |||||| |||| ||| Sbjct 212 CCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCTTTGGCCTCACAAAATGC 271 Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCCC 8617 |||||||||| ||||||||||| | ||| ||||| Sbjct 272 TGGGATTACATGCATGAGCCACAGTGCCAGGCCC 305 >seq10 Length=457 Score = 315 bits (348), Expect = 7e-81 Identities = 235/274 (86%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||| ||||||| |||||||| ||||||||||| ||||| | |||||| |||||||| Sbjct 430 TCTTACTCTGTCACCCAGGCTAGAGTGCAGTGGTGTGATCCCAGCTCACCTCAACCTCCA 371 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||| Sbjct 370 CCTCCCGGGCTCAAGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGC 311 Query 8464 AAGCCACCACGCCAAGCTAATTTTT-GTATTTTTAGTAGAGAGAGGGTTTCACCATGTTG 8522 |||||| |||| |||||||||| ||||||||||||||| | ||||| |||||||| Sbjct 310 CCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGGCGGAGTTTCTCCATGTTG 251 Query 8523 GCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTG 8582 ||||||||||||||||||||||| ||||| |||||| || |||| ||||||| |||| Sbjct 250 GCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATCTGCCCACCTCAGCCTCCCGAAGTC 191 Query 8583 CTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||||||||||| |||||||||||||| |||| Sbjct 190 CTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC 157 >seq1078 Length=298 Score = 313 bits (346), Expect = 3e-80 Identities = 229/262 (87%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||||||||||||||||||| |||||| |||| | | |||||||||||||| Sbjct 40 TCTCACTCTGTTGCCCAGGCTGGAGTGTAGTGGCACGATCCCGGTTCACTGCAACCTCCA 99 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 | |||| ||||||||| |||||| |||||||||| | ||||||||||||||||||||| Sbjct 100 CTTCCCCGGTTCAAGCGATTCTCATGCCTCAGCC-CTCGAGTAGCTGGGATTACAGGCAC 158 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||||||| || ||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 159 CTGCCACCATACCTGGCTAA-TTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGG 217 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 |||||||||||| || | |||||||| |||||||| |||||| ||||||||||||||| Sbjct 218 TCAGGCTGGTCTCAGACGCTTGACCTCAGGTGATCCA-CTGCCTTGGCCTCCCAAAGTGC 276 Query 8584 TGGGATTACAGGCATGAGCCAC 8605 ||||||||||||| |||||||| Sbjct 277 TGGGATTACAGGCGTGAGCCAC 298 >seq2427 Length=507 Score = 311 bits (344), Expect = 9e-80 Identities = 210/234 (90%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 8352 TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGG 8411 ||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||| | Sbjct 204 TGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAG 263 Query 8412 GTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACC 8471 |||||||| ||| |||||||||||||||| ||||||||||||||||||| | |||||| Sbjct 264 GTTCAAGCGATTTTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCATGCCACC 323 Query 8472 ACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTG 8531 | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 324 ATGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTG 383 Query 8532 GTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTG 8585 |||| |||||||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 384 GTCTTGAACTCCTGACCTC--GTGATCCACCTGCCTCAGCCTCTCAAAGTGCTG 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521471429718800