Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq684 100 2e-16 >seq684 Length=410242 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||| ||||||||||||||||||| || | || || || ||| ||| || Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || |||| ||||||| | |||||| |||| || || || || || |||||| Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| ||||| |||||||| Sbjct 337296 GTCTTAACGAAAATTTGCAT 337315 Score = 95.1 bits (104), Expect = 9e-15 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || ||||| |||||||| |||||||||| || | ||||| || || || | Sbjct 338589 TGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATC--TTGTA 338646 Query 44252 TTCTGC--TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 || ||| || | || |||| ||||||| | |||||| |||| || || || || | Sbjct 338647 TTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGC 338706 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||||| ||||| |||||||| Sbjct 338707 CAGTGAGGGTCTTAACGAATATTTGCAT 338734 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||| |||||||| |||||||||| || | |||||||| || || | || ||| Sbjct 337464 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATC--TTGTATTTTGC 337521 Query 44258 -TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 || | ||| |||| ||||||| | ||| || |||| || || || || || |||| Sbjct 337522 CTTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGA 337581 Query 44316 GGGTCTTCACGAAGATTTGCAT 44337 ||||||| ||||| |||||||| Sbjct 337582 GGGTCTTAACGAAAATTTGCAT 337603 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||| |||||||| |||||||||| || | ||||| || || || | || ||| Sbjct 367041 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATC--TTGTATTTTGC 367098 Query 44258 -TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 || | ||| |||| ||||||| | |||||| |||| || || || || || |||| Sbjct 367099 CTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGA 367158 Query 44316 GGGTCTTCACGAAGATTTGCAT 44337 ||||||| ||||| |||||||| Sbjct 367159 GGGTCTTAACGAAAATTTGCAT 367180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359979247272414