Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1852 111 4e-19 seq833 111 4e-19 seq684 104 6e-17 >seq1852 Length=8990 Score = 111 bits (122), Expect = 4e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 || |||| | || || |||||||| ||||| || |||||||| || || || || || | Sbjct 5655 TTCAAATTATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTG 5714 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || |||||||||||||| || |||||| || |||||||| || ||||| || |||| Sbjct 5715 AACCATCAGACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 5774 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 | || |||||| || | ||||| || || || Sbjct 5775 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 5805 >seq833 Length=82521 Score = 111 bits (122), Expect = 4e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 || |||| | || || |||||||| ||||| || |||||||| || || || || || | Sbjct 79805 TTCAAATTATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTG 79864 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || |||||||||||||| || |||||| || |||||||| || ||||| || |||| Sbjct 79865 AACCATCAGACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 79924 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 | || |||||| || | ||||| || || || Sbjct 79925 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 79955 >seq684 Length=410242 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | |||||||||||||| || || || || || ||||| Sbjct 367805 CAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCAGAT 367746 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| ||||||||||| |||||||| || || || Sbjct 367745 ACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAACAG 367686 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||| || || || Sbjct 367685 CGACTTATTTTTGCTGG 367669 Score = 100 bits (110), Expect = 7e-16 Identities = 112/149 (75%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||||||||| || ||||| || || || || |||||| Sbjct 368152 AAAATGC---AGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAA 368096 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||||||| || || || || || || |||||||| ||||||||||| || || Sbjct 368095 GCCTCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCC 368036 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 || ||||| || || || || || || || Sbjct 368035 GATCAGCAGCGTCTGATATTTGCTGGTAA 368007 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | |||||||||||||| || || || || || ||||| Sbjct 339362 CAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCAGAT 339303 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| ||||||||||| |||||||| || || || Sbjct 339302 ACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAACAG 339243 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 339242 CGGCTTATTTTTGCTGG 339226 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || ||||| ||||| | || |||||| || ||| Sbjct 337883 CAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCTGAC 337824 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || || || |||||| Sbjct 337823 ACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 337764 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 337763 CGTTTGATTTTTGCTGGTAA 337744 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||||||||| || ||||| || || || || |||||| Sbjct 339709 AAAATGC---AGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAA 339653 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||||| | || || || || ||| || |||||||| ||||| ||||| || || Sbjct 339652 CCCTCAGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 339593 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 || || || || || || || || || || Sbjct 339592 GATCAACAGCGTCTCATTTTTGCAGGTAA 339564 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| ||||| | || |||||| || ||| Sbjct 367177 CAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCCGAC 367118 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || || || ||||||||||| || || || |||||| Sbjct 367117 ACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGCAA 367058 Query 178044 CG 178045 || Sbjct 367057 CG 367056 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| ||||| | || || ||| || ||| Sbjct 337030 CAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCCGAC 336971 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||| ||||| || || || |||||| Sbjct 336970 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAGCAA 336911 Query 178044 CG 178045 || Sbjct 336910 CG 336909 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| ||||| | || |||||| || ||| Sbjct 337312 CAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCCGAC 337253 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || ||||| ||||| ||||| || || || ||||| Sbjct 337252 ACAATAGAAAATGTGAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAGCAG 337193 Query 178044 CGACTTATCTTCGCCGG 178060 || | || || ||||| Sbjct 337192 CGTTTGATTTTTGCCGG 337176 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || ||||| |||||| | || |||||| || || Sbjct 366892 CAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCTGAT 366833 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || ||||||||||| || || || |||||| Sbjct 366832 ACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGCAA 366773 Query 178044 CG 178045 || Sbjct 366772 CG 366771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203691995227148