Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1852 111 4e-19
seq833 111 4e-19
seq684 104 6e-17
>seq1852
Length=8990
Score = 111 bits (122), Expect = 4e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972
|| |||| | || || |||||||| ||||| || |||||||| || || || || || |
Sbjct 5655 TTCAAATTATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTG 5714
Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| |||||||||||||| || |||||| || |||||||| || ||||| || ||||
Sbjct 5715 AACCATCAGACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 5774
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063
| || |||||| || | ||||| || || ||
Sbjct 5775 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 5805
>seq833
Length=82521
Score = 111 bits (122), Expect = 4e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972
|| |||| | || || |||||||| ||||| || |||||||| || || || || || |
Sbjct 79805 TTCAAATTATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTG 79864
Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| |||||||||||||| || |||||| || |||||||| || ||||| || ||||
Sbjct 79865 AACCATCAGACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 79924
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063
| || |||||| || | ||||| || || ||
Sbjct 79925 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 79955
>seq684
Length=410242
Score = 104 bits (114), Expect = 6e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || | |||||||||||||| || || || || || |||||
Sbjct 367805 CAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCAGAT 367746
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| ||| |||||||| ||||||||||| |||||||| || || ||
Sbjct 367745 ACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAACAG 367686
Query 178044 CGACTTATCTTCGCCGG 178060
|||||||| || || ||
Sbjct 367685 CGACTTATTTTTGCTGG 367669
Score = 100 bits (110), Expect = 7e-16
Identities = 112/149 (75%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || |||||||||||||| || ||||| || || || || ||||||
Sbjct 368152 AAAATGC---AGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAA 368096
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||||||||| || || || || || || |||||||| ||||||||||| || ||
Sbjct 368095 GCCTCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCC 368036
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063
|| ||||| || || || || || || ||
Sbjct 368035 GATCAGCAGCGTCTGATATTTGCTGGTAA 368007
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || | |||||||||||||| || || || || || |||||
Sbjct 339362 CAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCAGAT 339303
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| ||| |||||||| ||||||||||| |||||||| || || ||
Sbjct 339302 ACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAACAG 339243
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 339242 CGGCTTATTTTTGCTGG 339226
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||| || || || ||||| ||||| | || |||||| || |||
Sbjct 337883 CAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCTGAC 337824
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || || || ||||||
Sbjct 337823 ACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 337764
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 337763 CGTTTGATTTTTGCTGGTAA 337744
Score = 91.5 bits (100), Expect = 4e-13
Identities = 110/149 (74%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || |||||||||||||| || ||||| || || || || ||||||
Sbjct 339709 AAAATGC---AGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAA 339653
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||||||| | || || || || ||| || |||||||| ||||| ||||| || ||
Sbjct 339652 CCCTCAGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 339593
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063
|| || || || || || || || || ||
Sbjct 339592 GATCAACAGCGTCTCATTTTTGCAGGTAA 339564
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || ||||| || ||||| ||||| | || |||||| || |||
Sbjct 367177 CAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCCGAC 367118
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || || || ||||||||||| || || || ||||||
Sbjct 367117 ACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGCAA 367058
Query 178044 CG 178045
||
Sbjct 367057 CG 367056
Score = 86.0 bits (94), Expect = 2e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || ||||| || ||||| ||||| | || || ||| || |||
Sbjct 337030 CAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCCGAC 336971
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||| ||||| || || || ||||||
Sbjct 336970 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAGCAA 336911
Query 178044 CG 178045
||
Sbjct 336910 CG 336909
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || ||||| || ||||| ||||| | || |||||| || |||
Sbjct 337312 CAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCCGAC 337253
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || ||||| ||||| ||||| || || || |||||
Sbjct 337252 ACAATAGAAAATGTGAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAGCAG 337193
Query 178044 CGACTTATCTTCGCCGG 178060
|| | || || |||||
Sbjct 337192 CGTTTGATTTTTGCCGG 337176
Score = 86.0 bits (94), Expect = 2e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||| || || || ||||| |||||| | || |||||| || ||
Sbjct 366892 CAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCTGAT 366833
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || || || ||||||||||| || || || ||||||
Sbjct 366832 ACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGCAA 366773
Query 178044 CG 178045
||
Sbjct 366772 CG 366771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203691995227148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |