Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq7 100 6e-16 >seq7 Length=818235 Score = 100 bits (110), Expect = 6e-16 Identities = 226/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 || || || || |||||||| || ||| | || || | || | | || || ||| Sbjct 211380 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 211321 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || ||||| ||| ||| ||||||||||| || ||| ||| ||||||| || | Sbjct 211320 CCAATCGGCAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 211261 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921 || || | | || || ||||| ||||| || || ||||| ||||| ||||| Sbjct 211260 ATGGTGCTCATCAGACTGACTTCACCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCA 211201 Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAAT---ATAAT 281978 | ||| || |||||||| ||| | | |||||| |||||| ||| | || Sbjct 211200 GCAAGCTGAGCGACCTTCACTTCTCGTTTATCGTTGCGCTTGAAA---CAAGTGAACAAA 211144 Query 281979 ACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-C 282037 ||||||||||| |||||| || |||||||| | || |||||||| || || | | Sbjct 211143 ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCC 211084 Query 282038 ATACCGCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073 || || ||||||||| | || ||||| ||||| Sbjct 211083 ATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 211049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057734629078220