Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq68 111 2e-19 >seq68 Length=215320 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 54704 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763 ||||| ||||| |||||||| | || ||||||| | | | ||||||| | ||| Sbjct 28354 GAAATCATCGGCGAATGTTTGTTTGTGTTGGGATTGATCCACTGATATAAATCATCGATC 28295 Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 28294 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 28235 Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTG 54883 | || ||||| || ||||||| |||||| || || | ||||| || | || | || Sbjct 28234 AATATCGCATAGTCAGGATGTTTTGTAGTCATTGTAGCGGAAATTTCAGCAGCCAAATTG 28175 Query 54884 TCCAATTCTACCGTTGTTACTCCATTATA 54912 |||||||| || ||||| || || | ||| Sbjct 28174 TCCAATTCGACAGTTGTGACACCTTGATA 28146 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 30927 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 30868 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| || || |||| ||||| |||||||| || ||||| | ||| | || Sbjct 30867 GTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTTAGCATAGTTGGGC 30808 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || || || ||||||| || || ||| || ||||| || ||||| || || ||| Sbjct 30807 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCACCCCTTTCGGCGGCC 30748 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012 || | ||||| ||||| | ||||||||||| Sbjct 30747 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 30714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 |||||| |||||||| || | || | ||||| || | ||| || || | ||| || Sbjct 30505 TACTTGGAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTATGCTTCTAC 30446 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || ||||| || ||||||||||| || ||||||||||||||||| || |||| || || Sbjct 30445 TGATTCATTGTTGCCCAAAATTTGCGCTGTTGATGCAGTCGGCATTGGAGCCAACAGCAA 30386 Query 53269 ACTATTTCTAAGACCGTA 53286 ||||| ||||| || Sbjct 30385 CGAATTTCGCAGACCATA 30368 Score = 86.0 bits (94), Expect = 7e-12 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 53356 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 30239 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 30180 Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 || | || || || ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 30179 TGCCAAATCGCAGCTACTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 30120 Query 53476 TAGA--TCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 53532 | ||| | | |||| || | ||||| ||||| || | ||| || || || || Sbjct 30119 CAACAGTCTAGCTTCTTC--GGAT-TCAAACGGATATCGCAACAAAATGAAAGCATCCGC 30063 Query 53533 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGC 53586 || ||||| ||||||||||| || |||| ||| | || ||||| |||| || Sbjct 30062 CAACCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACCTTTCTGC 30009 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 |||||| | || || |||||||| || ||| || || || || |||||||| ||||| Sbjct 29708 ATATTGCACAATTTCTGTGCAAAGGTTTGAACATTTTATAGTACCCAAATTTTGCTGATT 29649 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 |||| | || |||||||| || || | || || ||||| ||||||||||| || || Sbjct 29648 CGACTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCAGTTTCAATTTGAGA 29589 Query 53869 TTCTATAATCGCTTTCCA 53886 || || || || | ||| Sbjct 29588 CTCAATTATTGCGTACCA 29571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593672662497120