Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq71 158 1e-33 >seq71 Length=204746 Score = 158 bits (174), Expect = 1e-33 Identities = 260/372 (70%), Gaps = 5/372 (1%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| || || || |||| || | || ||| |||| || || | |||||| ||||| || Sbjct 134219 GGTGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCA 134278 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCC--TCATCGACACGTACGTG 116920 || ||||| || || || || || || ||||| | || | || ||||| ||| | Sbjct 134279 AATTGCCATAGAAAATGTCCATTCCGAGATGTA--CAGCCTGTTGATTGACACCTACATC 134336 Query 116921 CGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAA 116980 || | ||| |||| |||||| ||||| ||||| || || ||||| || || Sbjct 134337 CGTGATCCGGTGGAGCGTGAATTTTTGTTCAACGCAATCGAAACCATTCCGTGTGTGAAG 134396 Query 116981 GAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGC 117040 | || || || ||||| |||| ||||||| | | | | | | ||| ||| || Sbjct 134397 AAAAAAGCAGACTGGGCTTTGCGTTGGATCGGTGACCGCCAATCACCGTTCTCCGAACGT 134456 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 |||| || ||||| || || || ||| | |||||||||||||| ||||| | || || Sbjct 134457 TTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCGGGCAGCTTCGCGTCAATTTTC 134516 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||| | || || || ||||| ||||| || |||| |||||||||||||| ||||| | Sbjct 134517 TGGTTGAAAAAGCGAGGCCTGATGCCAGGTTTGACCTTCAGCAACGAGCTGATCTCTCGT 134576 Query 117161 GACGAGGGTCTG 117172 ||||| |||||| Sbjct 134577 GACGA-GGTCTG 134587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515176733057440