Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq20 100 4e-16 >seq20 Length=498608 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| || ||| | ||| | ||| || Sbjct 299283 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACTTTGGAGGTGGAACCATC 299224 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| |||||||||||||||||||| || ||||| ||||| Sbjct 299223 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 299164 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| | | || ||||| || ||| |||| Sbjct 299163 GCAACGTTTGATATTTGCTGGTAAATAATT 299134 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 124669 TTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAG 124728 ||||| |||||||||||| || ||| |||||||||| ||||||||||||||| |||| Sbjct 326240 TTTTTTAAGGAAAACAATTGGAAGATGGTCGAACATTGTCAGATTATAATATTCAGAAAG 326181 Query 124729 AATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||| ||||| | ||| | |||||||| || ||| || Sbjct 326180 AAAGCACGTTGCACTTGGTGCTTCGTCTTCGAGGTGGAATGCAAATTT 326133 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 ||||| |||||| | |||||| |||||||||| ||||||||| ||||| || ||| Sbjct 343580 GCAGGGAAACAACTGGAGGATGGTCGAACATTGTCAGATTATAACATTCAGAAGGAAAGT 343521 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| | |||||||| || ||||| ||| || Sbjct 343520 ACTTTGCATTTGGTGCTGCGTTTACGTGGCGGTATGCAAATTT 343478 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || || || ||||||||||| |||| ||||| || Sbjct 343918 ATGCAGATATTTGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 343859 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| |||||||| ||||| ||||| || || |||||||| Sbjct 343858 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 343799 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||||| | || |||||||| || Sbjct 343798 CAAAGATTAATCTTTGCAGGTAA 343776 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| || ||| | || | ||| | Sbjct 326422 AATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTC 326363 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| ||| ||||| |||||||||||||||||||| || ||||| ||||| Sbjct 326362 AGATACAATAGAGAATGTAAAAAGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 326303 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 ||| | | || ||||| || || Sbjct 326302 GCAACGTTTAATATTTGCTGGTAA 326279 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| || ||| | || | ||| || Sbjct 325290 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATTACTTTGGAAGTGGAACCATC 325231 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| |||||||||||||||||||| || ||||| ||||| Sbjct 325230 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 325171 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 325170 GCAACGTTTGATATTTGCCGG 325150 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | ||||| ||||| || || | || |||| | Sbjct 300196 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 300137 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || ||||| || |||||||| |||||||| || ||||| ||||| Sbjct 300136 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAG 300077 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 300076 CAGCGGCTTATTTTTGCTGG 300057 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | ||||| ||||| || || | || |||| | Sbjct 327050 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 326991 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || ||||| || |||||||| |||||||| || ||||| ||||| Sbjct 326990 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAG 326931 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 326930 CAGCGGCTTATTTTTGCTGG 326911 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || |||||||| ||| | || | ||| || Sbjct 298716 AATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATC 298657 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 298656 CGACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 298597 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 298596 GCAACGTTTGATATTTGCTGG 298576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755393731539200