Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq156 93.3 8e-14 >seq156 Length=94912 Score = 93.3 bits (102), Expect = 8e-14 Identities = 238/361 (66%), Gaps = 5/361 (1%) Strand=Plus/Plus Query 135575 AAACTATAGGTATTCCTATTTATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTAC 135634 ||| ||| || ||| ||| | | |||| ||||| |||| | |||||| || Sbjct 49425 AAATTATCCGTCTTCGTAT--ACAGAGATGCTGACGAATGGATGGCTTGGAAACAACGTG 49482 Query 135635 CCGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCT 135694 |||||| || | || || |||| ||| ||||||| || |||| | || ||||| | Sbjct 49483 GTGATCCTATTCTTCACGTACAACTAAGGCGATGGGCAGACATTTTAGTGATTGCGCCAT 49542 Query 135695 TAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTA 135754 | |||||| || | || |||||| | | ||| || || |||||||| | || | Sbjct 49543 TGGACGCAAATTCGATGGCGAAAATATCCAGTGGAATTTGTGATAATTTGTTAACAAGTT 49602 Query 135755 TTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTA 135814 | || ||||| |||||| ||||| || | | ||||| ||||||||||| | Sbjct 49603 TGGTTAGAGCTTGGGATTGCGCAAAACCGGTCTATATATGTCCCGCAATGAATACCTACA 49662 Query 135815 TGTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATATATG---GGTTTCA 135871 |||||||||| || | || | ||||| || || | | | ||| || || || |||| Sbjct 49663 TGTGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTGTTTGGATTCA 49722 Query 135872 TAGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGG 135931 ||| | ||||| || || || || || || ||| || ||||||| |||| Sbjct 49723 AGGAAGTTCCTTGCATTGAGAAGGAATTAATGTGCGGTGACCGTGGTTATGGTGCCATGG 49782 Query 135932 C 135932 | Sbjct 49783 C 49783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923120705503760