Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq117 120 3e-22 seq51 109 6e-19 seq5 104 3e-17 seq3 104 3e-17 >seq117 Length=126953 Score = 120 bits (132), Expect = 3e-22 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||| |||||||||| |||| |||| ||||||||||||| |||| |||||||||||||||| Sbjct 50626 TTTTTGAAAAATTT-CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGG 50684 Query 60111 ACATACTCACCACTATACTACCGAGGATTGA 60141 ||||||||||||||||||||||||| ||| Sbjct 50685 GAATACTCACCACTATACTACCGAGGACTGA 50715 >seq51 Length=263223 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 28246 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 28187 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 28186 TATACTACCGAGGAT 28172 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| |||| ||| |||||||||||| ||||||||||| Sbjct 27549 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCACGTGACAGGCGGGAATACTCACCAC 27490 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 27489 TATACTACCGAGGAT 27475 >seq5 Length=908979 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| |||| |||||||||||||||| ||||| Sbjct 603048 AAAACATCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 603107 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 603108 CACCACTATACTACCGAGGA 603127 >seq3 Length=1211087 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 458765 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 458706 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 458705 TACTACCGAGGA 458694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571770467934320