Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq71 141 8e-29 seq68 129 5e-25 >seq71 Length=204746 Score = 141 bits (156), Expect = 8e-29 Identities = 255/369 (69%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| ||| ||||||| |||||| | |||||||| || || | | ||| || || || || Sbjct 134219 GGTGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCA 134278 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | ||||| ||||| || ||||| || ||||| || | || || || ||| | Sbjct 134279 AATTGCCATAGAAAATGTCCATTCCGAGATGTACAGCCTGTTGATTGACACCTACATCCG 134338 Query 57857 GGACAACGACGAGAAACGTAGACT---GTTCAACGCGATCGAAACAATGCCCGCGATCGC 57913 || | ||| ||| | | ||||||||| |||||||| || || | Sbjct 134339 TGATCCGGTGGAG---CGTGAATTTTTGTTCAACGCAATCGAAACCATTCCGTGTGTGAA 134395 Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGA 57972 || || ||||| ||| | | ||||| | ||||| | ||||| |||| Sbjct 134396 GAAAAAAGCAGACTGGGCTTTGCGTTGGATCGGTGACCGCCAATCAC-CGTTCTCCGAAC 134454 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032 | | |||||||||| || || ||||| || ||||||||||||||||| ||| |||| | Sbjct 134455 GTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCGGGCAGCTTCGCGTCAATTT 134514 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| |||| || || ||||||||||| || |||| || ||||||||| |||| || | Sbjct 134515 TCTGGTTGAAAAAGCGAGGCCTGATGCCAGGTTTGACCTTCAGCAACGAGCTGATCTCTC 134574 Query 58093 GCGACGAGG 58101 | ||||||| Sbjct 134575 GTGACGAGG 134583 >seq68 Length=215320 Score = 129 bits (142), Expect = 5e-25 Identities = 250/368 (68%), Gaps = 11/368 (3%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 |||||||| || || || || || | | ||||| ||||| | | ||| ||||| || Sbjct 30927 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 30868 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || ||||| || ||||||| |||| ||||| |||||||||| ||| |||| | ||| Sbjct 30867 GTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTTAGCATAGTTGGGC 30808 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | |||| | ||| |||||||| || || || || || || | ||||||||| Sbjct 30807 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCACCCCTTTCGGCGGCC 30748 Query 22286 ATATTTATCAATGTACGCAT-----CGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 || | ||| |||||| || |||||||| || |||||||||| || | | Sbjct 30747 ATGTCTAT-----GACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTA 30693 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 |||| |||||| |||| |||| || | || || || ||| ||||| ||||| Sbjct 30692 TCTCAGCCGGTATTGATTGGATCGATTGAATAGAACCTTTGTTGGCGATGATTTCATTTT 30633 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 | | | || | ||| | ||| | || ||||||||| | || |||| | || || | Sbjct 30632 TGAGTGATTCATCCCAAAGACCCAATTCGACCAAATCTTTCATCAAATGATGATTGACAA 30573 Query 22461 -CTTGAAA 22467 ||| ||| Sbjct 30572 TCTTAAAA 30565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| ||| |||| || ||||| |||||||| || ||||| |||| || | ||| | Sbjct 29370 TTCAATGCGCTTCATGAACAGATCGGGTATCCAAAGGGCGTAAAACAAATCTCTGGCTCT 29311 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || |||| |||||||||||| || | ||| || || | ||| || ||||| Sbjct 29310 GTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 29251 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || | ||||| |||||||| || ||||||| Sbjct 29250 AGGTTCCAAATAAACCGCAAACGCCCCAGGTCTCT 29216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445729657704480