Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq129 95.1 2e-14 >seq129 Length=119590 Score = 95.1 bits (104), Expect = 2e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 || ||||||||||| || |||||| | ||||||||||| || || || | || ||| Sbjct 36454 TTTTGGAGAGGAGTGGTTGAAGAATTGCTTTGGTTCATCAGTGGAAACACGAATGCGAAA 36513 Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368 | | | ||||||| | |||||||| | | ||| || | ||||| |||||| Sbjct 36514 AAGCTTTCAGAGAAGAATGTTAACATCTGGGATGGAAATTCTTCCAGAGAATTCTTGGAC 36573 Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428 ||||||||| | || || | ||| || || ||||| || || || || || |||||| Sbjct 36574 AGTAGAGGGCTGTATAATTATGAAGAAGGTGACTTGGGGCCTGTTTATGGCTTTCAATGG 36633 Query 35429 CGTCATTTTGGTGCTGAATATGATACCTGT-TCTTCCGATTATACTGGAAAGGGTATTGA 35487 || || ||||| | ||| | | || | | |||||||| | ||||| || ||| Sbjct 36634 CGCCACTTTGGGTATCCGTAT-ACATCTATGACGGCCGATTATGCAGGAAAAGGCTATGA 36692 Query 35488 TCAATT 35493 |||||| Sbjct 36693 TCAATT 36698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989500394377270