Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq68 102 1e-16 >seq68 Length=215320 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 30927 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 30868 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| || || |||| ||||| |||||||| ||| ||||| | ||| | || Sbjct 30867 GTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTTAGCATAGTTGGGC 30808 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || || || ||||||| || || ||| || ||||| || ||||| || || ||| Sbjct 30807 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCACCCCTTTCGGCGGCC 30748 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250 || | ||||| ||||| | ||||||||||| Sbjct 30747 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 30714 Score = 95.1 bits (104), Expect = 2e-14 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 62549 TTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTT 62608 |||||||| ||| | |||||| || |||| |||||| |||||||| || Sbjct 30284 TTCCCAATCCCACAAATCCGAAGGCTGAACATTCCACATGTCATATTGAAGAATACCCTT 30225 Query 62609 ACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACT 62668 ||| || || ||| ||| || || ||||| || || | || | | || || Sbjct 30224 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAGCT 30165 Query 62669 CGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGA--TCTTG-TGC 62725 ||||| ||| | ||||| ||||||||||| || |||||||| | ||| | | | Sbjct 30164 ACTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAGTCTAGCTTC 30105 Query 62726 TTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACC 62785 ||| || | ||||| ||||| || | ||| || || ||||| || ||||| ||||| Sbjct 30104 TTC--GGAT-TCAAACGGATATCGCAACAAAATGAAAGCATCCGCCAACCCTTGCACACC 30048 Query 62786 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGC 62824 |||||| || |||| ||| | || ||||| |||| || Sbjct 30047 AATACCAATTGGTCGATGACGTTTGTTAGACCTTTCTGC 30009 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||||||||||||||| || | || | ||||| || | ||| || || | ||| || Sbjct 30505 TACTTGGAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTATGCTTCTAC 30446 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||| || ||||||||||| || ||||||||||||||||| || |||| || || Sbjct 30445 TGATTCATTGTTGCCCAAAATTTGCGCTGTTGATGCAGTCGGCATTGGAGCCAACAGCAA 30386 Query 62507 ACTATTTCTAAGACCGTA 62524 ||||| ||||| || Sbjct 30385 CGAATTTCGCAGACCATA 30368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 |||||| | || || |||||||| || ||| || ||||| || |||||||| ||||| Sbjct 29708 ATATTGCACAATTTCTGTGCAAAGGTTTGAACATTTTATAGTACCCAAATTTTGCTGATT 29649 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 |||| | || |||||||| || || | || || || || ||||||||||| ||||| Sbjct 29648 CGACTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCAGTTTCAATTTGAGA 29589 Query 63107 TTCTATAATCGCTTTCCA 63124 || || || || | ||| Sbjct 29588 CTCAATTATTGCGTACCA 29571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629765687284320