Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq68 123 2e-23 >seq68 Length=215320 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 37930 TATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACAC 37989 |||||||| | ||| |||| ||||| | ||| ||||||||||||||| |||||| Sbjct 29453 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCGTGAGGACAC 29394 Query 37990 ATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAAT 38049 || || ||||| ||| | || ||| | ||| | ||| || | ||| |||| ||| | Sbjct 29393 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAACAGATCGGGTATCCAAAGG 29334 Query 38050 GCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGA 38109 || ||| |||||| ||| ||| | ||||||| | ||| |||||| | | ||| Sbjct 29333 GCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGA 29274 Query 38110 AAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 ||||| ||||| || |||||||| ||||| | ||||| || | || || ||||| Sbjct 29273 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGCAAACGCCCCAGGTCT 29218 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| |||| | ||||| || ||||||| ||| ||||| |||||| Sbjct 30924 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 30865 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || |||| ||||| |||||||| |||||||| || || | || | Sbjct 30864 TTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTTAGCATAGTTGGGCTCG 30805 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | || | || ||| || || ||| || || || ||||| || ||||| ||||| Sbjct 30804 GCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCACCCCTTTCGGCGGCCATG 30745 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 |||| | |||||||| || || ||||||||||| || || Sbjct 30744 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 30704 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 ||| ||||| ||||| ||| ||| ||||| | || |||| |||||| || || |||| Sbjct 28979 CAAACCTATGCCACCGGCACTTTTCGATATAATTGCACATTCTTTTAATGTGTCGTATAT 28920 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGT-ATAAAACAACTAGACATTTGAGGCAATG 38410 ||||| || ||||| | ||| | ||| | | ||||||||| || || ||| || Sbjct 28919 GCCTTCGATGCTGTC-TGATTTCATCGTAATCAGAAAACAACTGCTCAACTGCGGCC-TG 28862 Query 38411 GA-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 | || ||||| || || | || || || || ||| ||||||||||||| |||| || Sbjct 28861 CATGTACCGGCATTGAACAGCGTTGGTGAAGCGTGTGTGAACCATTTTTCTGACATCAAA 28802 Query 38470 TTATATGT 38477 ||||| || Sbjct 28801 TTATAAGT 28794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468486181843360