Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq68 116 5e-21 >seq68 Length=215320 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 66735 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794 ||||| ||||| |||||||| | || ||||||| | | ||||||| || ||| Sbjct 28354 GAAATCATCGGCGAATGTTTGTTTGTGTTGGGATTGATCCACTGATATAAATCATCGATC 28295 Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 28294 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 28235 Query 66855 ATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 66914 | || ||||| || ||||||| |||||| || || | ||||| || |||| | || Sbjct 28234 AATATCGCATAGTCAGGATGTTTTGTAGTCATTGTAGCGGAAATTTCAGCAGCCAAATTG 28175 Query 66915 TCCAATTCTACCGTTGTTACTCCATTATA 66943 |||||||| || ||||| || || | ||| Sbjct 28174 TCCAATTCGACAGTTGTGACACCTTGATA 28146 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 30927 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 30868 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| || || |||| ||||| |||||||| ||| ||||| | ||| | || Sbjct 30867 GTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTTAGCATAGTTGGGC 30808 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || || || ||||||| || || ||| || ||||| || ||||| || || ||| Sbjct 30807 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCACCCCTTTCGGCGGCC 30748 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043 || | ||||| ||||| | ||||||||||| Sbjct 30747 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 30714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 |||||| |||||||| || | || | ||||| || | ||| || || | ||| || Sbjct 30505 TACTTGGAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTATGCTTCTAC 30446 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || ||||| || ||||||||||| || ||||||||||||||||| || |||| || || Sbjct 30445 TGATTCATTGTTGCCCAAAATTTGCGCTGTTGATGCAGTCGGCATTGGAGCCAACAGCAA 30386 Query 65300 ACTATTTCTAAGACCGTA 65317 ||||| ||||| || Sbjct 30385 CGAATTTCGCAGACCATA 30368 Score = 86.0 bits (94), Expect = 8e-12 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 30239 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 30180 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 || | || || || ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 30179 TGCCAAATCGCAGCTACTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 30120 Query 65507 TAGA--TCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 65563 | ||| | | |||| || | ||||| ||||| || | ||| || || || || Sbjct 30119 CAACAGTCTAGCTTCTTC--GGAT-TCAAACGGATATCGCAACAAAATGAAAGCATCCGC 30063 Query 65564 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGC 65617 || ||||| ||||||||||| || |||| ||| | || ||||| |||| || Sbjct 30062 CAACCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACCTTTCTGC 30009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658118550106960