Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 2e-12 seq71 86.0 6e-12 seq68 82.4 8e-11 >seq20 Length=498608 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | |||| |||||||||||| || || || || |||||||| ||||| Sbjct 299423 TTACCAGCAAATATCAAACGTTGCTGATCAGGTGGAATTCCCTCTTTGTCCTGTATTTTG 299482 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | ||||||| |||||||| || | || | || || || || Sbjct 299483 CCTTTTACATTTTCTATAGTGTCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTA 299542 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | |||||| ||||| || ||||| Sbjct 299543 AGCGTTTTAACGAAAATCTGCAT 299565 >seq71 Length=204746 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| | || | ||||||||||| ||||| | || ||||| ||| |||| Sbjct 134365 TCAACGCAATCGAAACCATTCCGTGTGTGAAGAAAAAAGCAGACTGGGCTTTGCGTTGGA 134424 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 ||| || | || | | || |||||||| |||||||||| || || ||||| Sbjct 134425 TCGGTGACCGCCAATCACCGTTCTCCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCA 134484 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711 | || |||||||| || || ||| |||| || | | |||| ||| | ||||| | Sbjct 134485 TTTTCTTTTCGGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGAGGCCTGATGCCAG 134544 Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGA 52748 | | || || ||||||||| |||| || || ||||| Sbjct 134545 GTTTGACCTTCAGCAACGAGCTGATCTCTCGTGACGA 134581 >seq68 Length=215320 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 152760 AAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATC 152819 ||||||||||| || || || || || | | ||||||||| | |||| ||||| || Sbjct 30882 AAATAGTACATCCCAGTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGT 30823 Query 152820 TTAGCCAAAGTAGGG-TCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGC 152878 |||| || ||| ||| ||||| |||| | || ||||| || ||| ||||| || || Sbjct 30822 TTAG-CATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGC 30764 Query 152879 GCCTCTATCTGCTGCCATGTCGATCATGAATTTT 152912 || || || || |||||||| || | | ||||| Sbjct 30763 ACCCCTTTCGGCGGCCATGTCTATGACGCATTTT 30730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496023111924800