Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq68 132 7e-26 >seq68 Length=215320 Score = 132 bits (146), Expect = 7e-26 Identities = 196/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 79219 GATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCG 79278 |||||||||||||| | ||| || || ||||||||| | |||||||| |||||||| Sbjct 30286 GATTCCCAATCCCACAAATCCGAAGGCTGAACATTCCACATGTCATATTGAAGAATACCC 30227 Query 79279 TTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAA 79338 |||||||| ||| ||| || || || || || || || || || || || || Sbjct 30226 TTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAG 30167 Query 79339 CTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 79398 || ||||| || | ||||| |||||||| ||||| |||||||| | | ||| Sbjct 30166 CTACTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAGTCTAGCT 30107 Query 79399 TCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCA 79458 ||| | ||||| ||||| || | ||| || || || || || ||||| |||||| Sbjct 30106 TCTTCGGATTCAAACGGATATCGCAACAAAATGAAAGCATCCGCCAACCCTTGCACACCA 30047 Query 79459 ATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGC 79496 ||||| || |||| ||| | || ||||| |||| || Sbjct 30046 ATACCAATTGGTCGATGACGTTTGTTAGACCTTTCTGC 30009 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 79852 TATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACAC 79911 |||||| ||| ||||| || ||||| | ||| | ||||| |||||||||| ||||||| Sbjct 29453 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCGTGAGGACAC 29394 Query 79912 ATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971 |||| ||||| ||||| || | | | || ||||| || ||||| || |||||||| Sbjct 29393 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAACAGATCGGGTATCCAAAGG 29334 Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 || ||| | |||||||| ||| | || ||| | ||||| |||||||| || || Sbjct 29333 GCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGA 29274 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || | | || || | ||||| |||||||| || Sbjct 29273 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 29239 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 30927 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 30868 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| || || |||| |||||||||||||| ||| ||||| | ||| | || Sbjct 30867 GTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTTAGCATAGTTGGGC 30808 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || || || ||||||| || || ||| || ||||| || ||||| || || ||| Sbjct 30807 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCACCCCTTTCGGCGGCC 30748 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 78922 || | ||||| ||||| | ||||||||||| Sbjct 30747 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 30714 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 |||||| | ||||| ||||| ||||| ||| || || || || |||||||| ||||| Sbjct 29708 ATATTGCACAATTTCTGTGCAAAGGTTTGAACATTTTATAGTACCCAAATTTTGCTGATT 29649 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 |||| | || |||||||| || || | || ||||| || ||||||||||| ||||| Sbjct 29648 CGACTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCAGTTTCAATTTGAGA 29589 Query 79779 TTCTATAATCGCTTTCCA 79796 || || || || | ||| Sbjct 29588 CTCAATTATTGCGTACCA 29571 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 |||||| |||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 30505 TACTTGGAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTATGCTTCTAC 30446 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 |||||||| || ||||||||||| || |||||||| || ||||| || |||| || || Sbjct 30445 TGATTCATTGTTGCCCAAAATTTGCGCTGTTGATGCAGTCGGCATTGGAGCCAACAGCAA 30386 Query 79179 ACTATTTCTAAGACCGTA 79196 ||||| ||||| || Sbjct 30385 CGAATTTCGCAGACCATA 30368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718209596694160