Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq68 116 5e-21 >seq68 Length=215320 Score = 116 bits (128), Expect = 5e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||||||||| || ||||| || || |||| ||||| |||||||| ||| ||||| Sbjct 30880 ATAGTACATCCCAGTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTT 30821 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | |||| | || ||||| ||||||||||||| |||||| ||| || ||||| || || Sbjct 30820 AGCATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCACC 30761 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005 ||| || || ||||| | ||||| ||||| | ||||||||||| Sbjct 30760 CCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 30714 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 71739 GGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 71798 || |||||| | |||||| |||||||| || ||| || || || || |||||||| || Sbjct 29711 GGAATATTGCACAATTTCTGTGCAAAGGTTTGAACATTTTATAGTACCCAAATTTTGCTG 29652 Query 71799 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTG 71858 ||| |||| | || |||||||| || || | |||||||| || ||||||||||| || Sbjct 29651 ATTCGACTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCAGTTTCAATTTG 29592 Query 71859 AGATTCTATAATCGCTTTCCA 71879 ||| || || || || | ||| Sbjct 29591 AGACTCAATTATTGCGTACCA 29571 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 |||||| |||||||| || | || | |||||| || | ||| || || | ||| || Sbjct 30505 TACTTGGAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTATGCTTCTAC 30446 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||| ||||| || ||||||||||| || ||||||||||||||||| || |||| || | Sbjct 30445 TGATTCATTGTTGCCCAAAATTTGCGCTGTTGATGCAGTCGGCATTGGAGCCAACAGCAA 30386 Query 71262 ACTATTTCTAAGACCAT 71278 ||||| ||||||| Sbjct 30385 CGAATTTCGCAGACCAT 30369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671083881351440