Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq71 120 5e-22 seq68 107 3e-18 >seq71 Length=204746 Score = 120 bits (132), Expect = 5e-22 Identities = 221/323 (68%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| || || |||||||| || || || || || || || |||||| |||| Sbjct 134264 CTTCTATGGCTTCCAAATTGCCATAGAAAATGTCCATTCCGAGATGTACAGCCTGTTGAT 134323 Query 125294 TGACATGTACATTCGCGATCCGC---AACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 ||||| ||||| || |||||| | ||| || || || ||||||||||| || Sbjct 134324 TGACACCTACATCCGTGATCCGGTGGAGCGTGAATTTTTGTTC---AACGCAATCGAAAC 134380 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | |||| | | ||||| || | |||| | || ||||||| |||| | | || Sbjct 134381 CATTCCGTGTGTGAAGAAAAAAGCAGACTGGGCTTTGCGTTGGATCGGTGACCGCCAATC 134440 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 ||| | |||| | |||| || ||||| || || || ||||| ||||||||||| || Sbjct 134441 ACCGTTCTCCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCGGGCAG 134500 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || ||| | || || ||| | || ||||| || || ||||| || |||| ||| || Sbjct 134501 CTTCGCGTCAATTTTCTGGTTGAAAAAGCGAGGCCTGATGCCAGGTTTGACCTTCAGCAA 134560 Query 125531 CGAGTTTATATCTCGAGACGAGG 125553 |||| | || ||||| ||||||| Sbjct 134561 CGAGCTGATCTCTCGTGACGAGG 134583 >seq68 Length=215320 Score = 107 bits (118), Expect = 3e-18 Identities = 199/287 (69%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 97977 ATCATGTACAACAATGGGTCCATTCAAAACATTACCATCA-TCCCGGAAGAGTTGCGCAG 98035 ||||| |||||| || || |||||| || | |||| | |||| ||| | || Sbjct 30641 ATCATCGCCAACAAAGGTTCTATTCAATCGATC-CAATCAATACCGGCTGAGATACGTGA 30699 Query 98036 AATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC-TGATCGATATGGCTGCCGACA 98094 | | |||||||| || ||||| ||| | | || | || | || || ||||| ||||| | Sbjct 30700 ATTGTACAAGACGGTTTGGGAAATTTCC-CAAAAATGCGTCATAGACATGGCCGCCGAAA 30758 Query 98095 GAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACA 98154 | |||| | ||||||||| || ||||| ||| | || |||||||||||| ||| Sbjct 30759 GGGGTGCTTTCATTGACCAATCCCAGTCGTTGAATATTCACATTGCCGAGCCCAACTATG 30818 Query 98155 GTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 | |||| ||||| || || |||| ||||| | || || || || || ||||||| Sbjct 30819 CTAAACTGACGTCGATGCATTTCTACGGCTGGAAGAGAGGACTGAAAACTGGGATGTACT 30878 Query 98215 ATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 || ||||||| ||| |||| | || || | ||| || |||||| Sbjct 30879 ATTTGAGAACCAAGCCGGCAGTGACGGCTATTCAATTCACCGTGGAC 30925 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA--A 96963 || || || ||||||||||||||||| ||| | ||||| || || || ||| ||| | Sbjct 29233 GCGGTTTATTTGGAACCTTGGCACGCAGACATATTTGA--TTTTCTTGACGCGAAAAAGA 29290 Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023 || | ||| | ||||| ||||||| || |||||||| || || ||| | || ||| Sbjct 29291 ACACAGGCATCGAAGAAAACAGAGCCAGAGATTTGTTTTACGCCCTTTGGATACCCGATC 29350 Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083 |||||||||||||| | | | || || | ||| || ||||| || || | | Sbjct 29351 TGTTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGTCCTCACGAATGTC 29410 Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 | || || | |||| |||||||| |||||||| Sbjct 29411 CAGGATTGGCGGATTTGTGGGGCGATGAGTTTGA 29444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740998118195440