Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq20 111 1e-19 seq3603 87.8 1e-12 seq2999 87.8 1e-12 >seq20 Length=498608 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||| ||| ||||| ||||||||||||| || || ||||||||||||||| || | Sbjct 299134 AATTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGA 299193 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||||| |||||| | ||||| || ||| ||| || || || || |||||||| Sbjct 299194 ATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTTT 299253 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||||||||| Sbjct 299254 CCAGTAAGGGTCTTAACAAAAATTTGCAT 299282 Score = 105 bits (116), Expect = 5e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 15231 ATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAA 15290 ||||||||||||| || || ||||||||||||||| || |||||||| |||||| Sbjct 325157 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACAT 325216 Query 15291 TTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15350 | ||||| || ||| ||| || || || ||||||||||| || || || || || | Sbjct 325217 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTTCCAGTAAGGGTCTTAA 325276 Query 15351 CAAAAATTTGCAT 15363 ||||||||||||| Sbjct 325277 CAAAAATTTGCAT 325289 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| |||| |||||||| || || ||||||||||||||| || ||||||| Sbjct 326279 TTACCAGCAAATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTG 326338 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || |||||| | ||||| ||||| ||| || || || || |||||||| || || Sbjct 326339 CTTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326398 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| Sbjct 326399 AGCGTCTTAACAAAAATTTGCAT 326421 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| ||||||||||||| || || ||||||||| ||||| || |||||| Sbjct 325430 TTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 325489 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || ||| | ||||| ||||| ||| || || || ||||||||||| || || Sbjct 325490 CTTTTCACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTA 325549 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| Sbjct 325550 AGTGTCTTAACAAAAATTTGCAT 325572 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| ||||||||||||| || || ||||||||| |||||||| |||||| Sbjct 299423 TTACCAGCAAATATCAAACGTTGCTGATCAGGTGGAATTCCCTCTTTGTCCTGTATTTTG 299482 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | |||||| ||||||| || ||| || || || || || |||||||| || || Sbjct 299483 CCTTTTACATTTTCTATAGTGTCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTA 299542 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || ||||| ||||| Sbjct 299543 AGCGTTTTAACGAAAATCTGCAT 299565 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 15231 ATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAA 15290 |||| |||||||| || || ||||||||||||||| || |||||| | || ||| Sbjct 298865 ATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCTTTCACAT 298924 Query 15291 TTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15350 | ||||| || ||| ||| || || || || |||||||| || || || ||||| | Sbjct 298925 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTAAGCGTTTTAA 298984 Query 15351 CAAAAATTTGCATA 15364 |||||||||||||| Sbjct 298985 CAAAAATTTGCATA 298998 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 ||||||||||| || || ||||||||| ||||| || ||||||| |||||| | Sbjct 325727 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTC 325786 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 ||||| ||||| ||| || || || ||||||||||| || || || || || ||| Sbjct 325787 TCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACA 325846 Query 15353 AAAATTTGCAT 15363 ||||||||||| Sbjct 325847 AAAATTTGCAT 325857 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 ||||||||||| || || ||||||||| ||||| || ||||||| |||||| | Sbjct 326012 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTC 326071 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 ||||| ||||| ||| || || || || |||||||| || || || || || ||| Sbjct 326072 TCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTAAGCGTCTTAACA 326131 Query 15353 AAAATTTGCAT 15363 ||||||||||| Sbjct 326132 AAAATTTGCAT 326142 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| ||||||||||||| || || ||||||||| ||||| || |||||| | Sbjct 298576 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCT 298635 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| | ||||| || ||| ||| || || || || || ||||| || || || Sbjct 298636 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 298695 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 298696 GTCTTAACAAAAATTTGCAT 298715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| ||||||| ||||| || || ||||| ||||| || || |||||| Sbjct 342771 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 342830 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||| ||| |||| || ||||| ||||| || || || || ||||| || || Sbjct 342831 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 342890 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||||| ||||||||||||||| Sbjct 342891 AAGGTTTTCACAAAAATTTGCATA 342914 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| ||||||| ||||| || || ||||| ||||| || || |||||| Sbjct 343058 TTACCAGCAAATATCAAGCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 343117 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||| ||| |||| || ||||| ||||| || || || || ||||| || || Sbjct 343118 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 343177 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||||| ||||||||||||||| Sbjct 343178 AAGGTTTTCACAAAAATTTGCATA 343201 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| ||||||| ||||| || || ||||| ||||| || || |||||| Sbjct 343345 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 343404 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||| ||| |||| || ||||| ||||| || || || || ||||| || || Sbjct 343405 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 343464 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||||| ||||||||||||||| Sbjct 343465 AATGTTTTCACAAAAATTTGCATA 343488 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 15239 CGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATG 15298 |||||||| ||| ||||||||| ||||| || |||||||| || ||| |||| ||| Sbjct 300413 CGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTGCCTTTCACATTTTCAATG 300472 Query 15299 GTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15358 | || ||| || || | ||||||||||| || || |||||||| ||||| || Sbjct 300473 GAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAGAGTTTTCACAAATATC 300532 Query 15359 TGCATATT 15366 ||||| || Sbjct 300533 TGCATTTT 300540 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| ||||||||||||| || || ||||||||| ||||| | |||||| | Sbjct 324868 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTACCTTGAATTTTACCT 324927 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| | ||||| || ||| ||| || || || || || ||||| || || || Sbjct 324928 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 324987 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 324988 GTCTTAACAAAAATTTGCAT 325007 >seq3603 Length=332 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 ||||||||||| || || ||||||||| ||||| || ||||||| |||||| || Sbjct 160 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTT 219 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 ||||| |||||| || || || || || |||||||| || || || ||||| || Sbjct 220 TCTATAGTATCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTTTAACG 279 Query 15353 AAAATTTGCAT 15363 ||||| ||||| Sbjct 280 AAAATCTGCAT 290 >seq2999 Length=368 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 ||||||||||| || || ||||||||| ||||| || ||||||| |||||| || Sbjct 173 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTT 114 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 ||||| |||||| || || || || || |||||||| || || || ||||| || Sbjct 113 TCTATAGTATCGGACGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTTTAACG 54 Query 15353 AAAATTTGCAT 15363 ||||| ||||| Sbjct 53 AAAATCTGCAT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362150093694954