Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq20 89.7 3e-13 >seq20 Length=498608 Score = 89.7 bits (98), Expect = 3e-13 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||| || ||| |||||| ||||||||||| |||| || || |||||||| || Sbjct 299133 CAATTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTG 299192 Query 33280 AA--TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 || | ||| |||||| | | || |||||| |||| || |||| ||| || ||| Sbjct 299193 AATTTTGCC--TTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTT 299250 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| || || || ||||||||||| Sbjct 299251 TTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 299282 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33235 AAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTAC 33294 |||||||||||||||||| || | || || |||||||| || ||| ||| || Sbjct 298863 AAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCTTTCAC 298922 Query 33295 TGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTT 33354 | | || |||||| |||| || |||| ||| || |||||||| ||||| ||||| Sbjct 298923 ATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTAAGCGTTTT 298982 Query 33355 TACGAAAATTTGCAT 33369 || ||||||||||| Sbjct 298983 AACAAAAATTTGCAT 298997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318751981637412