Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 >seq1 Length=1320437 Score = 98.7 bits (108), Expect = 9e-16 Identities = 186/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||||||| ||| || | ||| || | ||| ||| | ||||| Sbjct 1082726 GCCAGTGGAACCGAATCCGGCTGTTCCACGTTCTGTGTTGTCAAGGTGAGAT---TCTTC 1082670 Query 5563 CACA---TCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618 ||| | || || || || || || ||||| || || ||||| || || ||| | Sbjct 1082669 GACAATTTTCGGTAAGGCGATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGT-T 1082611 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || | ||||| | || ||| || ||||| | | ||| || || ||||| | ||| | Sbjct 1082610 TCACGTGAAAATCTTGGTCGCCAAAATTGAAAATAATCACACCAACATTGCCCCTGTAAT 1082551 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | ||||| | |||||||||||| | ||||||| |||||| | |||| ||| || || | Sbjct 1082550 CTGCGTCCACCACGCCCGCGCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAG 1082491 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | || | || || ||||| || | |||| Sbjct 1082490 GTGCAATACGACCATAGCAGCCGACAGGAA 1082461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430019838946928