Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20 190 3e-44 seq62 161 2e-35 seq28 149 1e-31 seq2 129 9e-26 >seq20 Length=498608 Score = 190 bits (210), Expect = 3e-44 Identities = 206/273 (75%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | ||| || |||||||| ||||||||||| ||||| || || Sbjct 101868 CGCGAAGCGTCATCGCAAAGTTCTACGTGATAACATTCAAGGAATCACGAAGCCTGCGAT 101809 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| |||||||| || |||||| || || ||| |||||||||| | Sbjct 101808 TCGACGTTTGGCTCGACGTGGTGGTGTGAAGCGTATCAGCGGCTTGATCTATGAAGAAAC 101749 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| |||||| ||||| | | ||| | | ||||||| | || ||| Sbjct 101748 TCGAGCTGTGTTGAAGTCTTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTACTGCGA 101689 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | || |||||||| ||||||| | || ||||| |||||| | ||||| Sbjct 101688 ACACGCTAAAAGGAAAACTGTCACGGCCATGGACGTTGTTTATGCGTTGAAAAGACAAGG 101629 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||| | |||||||| || || |||||| ||| Sbjct 101628 CCGAACCATTTATGGATTCGGTGGTTAATTTTC 101596 Score = 87.8 bits (96), Expect = 3e-13 Identities = 164/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 ||||| ||||| || | ||||| ||| |||| |||||||| || || | | Sbjct 32005 ATCACAAAGCCGGCAGTTCGTCGATTGGGCAGTCG-GGTGGAGTGAAACGGATAAGCCGT 31947 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 ||| | |||||||| | ||| || ||||| |||||| | | ||| | ||| | Sbjct 31946 TTGATTTATGAAGAAACTCGAACCGTGTTGAAATCCTTCCTTGAAAATGTTCGCGATGCT 31887 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 | || | |||| || || | ||| | |||||||||||| | |||||| | |||||| Sbjct 31886 G--TTAC-CTATTGTGAACATGGGAAAAGGAAGACTGTCACCGCTATGGATGTTGTCTAT 31830 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 ||||| ||| | |||||||| | || ||||||||||| | ||| ||| | |||| Sbjct 31829 GCATTAAAAAGACAAGGCCGAACTATCTATGGTTTTGGTGGATAA-CTTTTCATCA 31775 >seq62 Length=228955 Score = 161 bits (178), Expect = 2e-35 Identities = 195/262 (74%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||| | | | | | || ||||| || |||||||| || |||||||| || Sbjct 207246 GCTAAGCGTCATAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAGCCAGCAATT 207305 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||||||||||||||| |||||| | ||||| || | |||||||||| Sbjct 207306 CGTCGTTTGGCTCGTCGTGGTGGAGTGAAGCGTATTTCTGGCTTAATATATGAAGAGACG 207365 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 |||| |||||||| || | | | |||| | | |||||| | ||| ||| | Sbjct 207366 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGT-TACT-TACTGTG 207423 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || |||||||| ||||| || | |||||| | || ||||| | |||||||| | Sbjct 207424 AGCATGCGAAACGTAAAACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAGG 207483 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | ||||| || || || Sbjct 207484 GCCGAACCATTTACGGCTTCGG 207505 >seq28 Length=370956 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | || |||||||| |||||||||||||| || || || Sbjct 143723 GCTAAACGTCATCGTAAGGTTTTGCGTGATAACATTCAAGGAATCACCAAACCGGCAATT 143782 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || ||||||||||| || || | || ||| | |||||||| | | Sbjct 143783 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGTTTGATTTATGAAGAAACT 143842 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| |||||| | | ||| | | |||||| | |||| ||| Sbjct 143843 CGAGCCGTGTTGAAATCCTTCCTTGAAAATGTTGTTCGCGATGCTGTTACCTATTGCGAA 143902 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| |||||| | |||||| | || ||||| |||||| | |||||| Sbjct 143903 CATGCGAAAAGGAAGACCGTCACCGCTATGGATGTTGTATATGCGTTGAAAAGACAAGGC 143962 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | || ||||||||||| Sbjct 143963 CGAACCATCTATGGTTTTGG 143982 >seq2 Length=1307690 Score = 129 bits (142), Expect = 9e-26 Identities = 192/271 (71%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | | || |||||||| ||||||||||| || ||||| || Sbjct 501384 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACAAAACCAGCAATT 501325 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| |||||||| || ||| | || || ||| | |||||||| | | Sbjct 501324 CGACGATTGGCTCGACGTGGTGGTGTGAAGAGGATCAGCGGTTTGATTTATGAAGAAACT 501265 Query 16553 CGTGATGTTTTGAAGATCTTCCT---CAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | | ||| ||||| ||| || || | |||| | |||||| || || Sbjct 501264 AGAGCTGTGTTGAAATCCTTTCTTGAAAATATCGTT---CGAGATGCTGTCACGTACTGT 501208 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || || || ||| | || || || || | |||||| | ||||||||||||||| | ||| Sbjct 501207 GAACATGCCAAAAGGAAAACCGTTACAGCGATGGATGTTGTCTATGCATTGAAAAGACAA 501148 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || || | ||||||||||||||| |||||| Sbjct 501147 GGTCGCACGATTTATGGTTTTGGTGGTTAAT 501117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069171059642