Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq20 89.7 4e-13 >seq20 Length=498608 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 300196 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 300137 Query 25059 GACACTATCGAGTCACTGAAGCA--AAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| || || | || | ||| ||||||||||| || ||||| || | Sbjct 300136 GATACAATTGAGA-ACGTAAAAAGTAAGATTCAA-GACAAAGAAGGCATCCCACCAGATC 300079 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 | |||||| |||||||||| || Sbjct 300078 AGCAGCGGCTTATTTTTGCTGG 300057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 327050 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 326991 Query 25059 GACACTATCGAGTCACTGAAGCA--AAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| || || | || | ||| ||||||||||| || ||||| || | Sbjct 326990 GATACAATTGAGA-ACGTAAAAAGTAAGATTCAA-GACAAAGAAGGCATCCCACCAGATC 326933 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 | |||||| |||||||||| || Sbjct 326932 AGCAGCGGCTTATTTTTGCTGG 326911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433293175866110