Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq71 208 8e-49 >seq71 Length=204746 Score = 208 bits (230), Expect = 8e-49 Identities = 263/360 (73%), Gaps = 10/360 (3%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| || || |||| ||| |||||||| || |||||||| | ||| ||||| || || Sbjct 134581 TCGTCACGAGAGATCAGCTCGTTGCTGAAGGTCAAACCTGGCATCAGGCCTCGCTTTTTC 134522 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || ||||| || || || || ||||| || || ||||| || ||||| || || Sbjct 134521 AACCAGAAAATTGACGCGAAGCTGCCCGAAAAGAAAATGCCTTCAACAGCTGCGAACGCG 134462 Query 93236 ACAATACGTTCGGCAAA-----ATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 || | |||||||| || ||| |||| | || | ||||| |||||||| | Sbjct 134461 ACCAAACGTTCGGAGAACGGTGATTGGCGG--TCACCG---ATCCAACGCAAAGCCCAGT 134407 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGT 93350 | ||||||||||| | ||| || | |||||||| ||||| || | | || ||||| Sbjct 134406 CTGCTTTTTTCTTCACACACGGAATGGTTTCGATTGCGTTGAACAAAAATTCACGCTCCA 134347 Query 93351 CCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCA 93410 ||| ||| || ||||| || || || ||||| ||||| || ||||||||||| || | Sbjct 134346 CCGGATCACGGATGTAGGTGTCAATCAACAGGCTGTACATCTCGGAATGGACATTTTCTA 134287 Query 93411 TTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATC 93470 | ||||||||||| || ||||| | | ||||| || | || | |||||||||||||| Sbjct 134286 TGGCAATTTGGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGAAAATC 134227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556814900748560