Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq20 118 9e-22 seq68 82.4 6e-11 >seq20 Length=498608 Score = 118 bits (130), Expect = 9e-22 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| | || || ||||| ||||| | ||||||||| | || Sbjct 298997 ATGCAAATTTTTGTTAAAACGCTTACTGGAAAAACCATCACTTTGGAAGTGGAACCATCC 298938 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||| || || || |||||||| ||||| Sbjct 298937 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 298878 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTA 22368 |||||| | ||||||||||| | |||||| Sbjct 298877 CAACGTTTAATATTTGCCGGTATGCAGTTA 298848 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| ||||| | ||||||||| | || Sbjct 298715 ATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATCC 298656 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||| || ||||| |||||||| ||||| Sbjct 298655 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 298596 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | |||||||| || Sbjct 298595 CAACGTTTGATATTTGCTGG 298576 Score = 109 bits (120), Expect = 5e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | ||| | ||||||||| | || Sbjct 325289 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATTACTTTGGAAGTGGAACCATCC 325230 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||| || || || |||||||| ||||| Sbjct 325229 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 325170 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTA 22368 |||||| | ||||||||||| | |||||| Sbjct 325169 CAACGTTTGATATTTGCCGGTATGCAGTTA 325140 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| || Sbjct 300540 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCC 300481 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| |||||||| || || ||||| |||||||||||| Sbjct 300480 TCAGACTCCATTGAAAATGTGAAAGGCAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 300421 Query 22336 CAACAACGTCTTATATTTGCCGG 22358 |||||||| || || ||||| || Sbjct 300420 CAACAACGGCTCATTTTTGCTGG 300398 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| ||||| | ||||||||| | || Sbjct 325007 ATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATCC 324948 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||||||| || ||||| |||||||| ||||| Sbjct 324947 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGGTAAAGAGGGAATTCCACCAGATCAG 324888 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | |||||||| || Sbjct 324887 CAACGTTTGATATTTGCTGG 324868 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| ||||| | || |||||| | || Sbjct 299282 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACTTTGGAGGTGGAACCATCC 299223 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||| || || || |||||||| ||||| Sbjct 299222 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAG 299163 Query 22339 CAACGTCTTATATTTGCCGGCAAA 22362 |||||| | |||||||| || ||| Sbjct 299162 CAACGTTTGATATTTGCTGGTAAA 299139 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 325572 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325513 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || ||||| |||||||| ||||| Sbjct 325512 GATACAATAGAGAATGTGAAAAGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAG 325453 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | |||||||| || || Sbjct 325452 CAACGTTTGATATTTGCTGGTAA 325430 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| ||||| | ||||| ||| | | Sbjct 326421 ATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCA 326362 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || || || |||||||| ||||| Sbjct 326361 GATACAATAGAGAATGTAAAAAGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAG 326302 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | |||||||| || || Sbjct 326301 CAACGTTTAATATTTGCTGGTAA 326279 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| ||||| | ||||| ||| | | Sbjct 326142 ATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCA 326083 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || || ||||| |||||||| ||||| Sbjct 326082 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 326023 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || |||||||| || Sbjct 326022 CAACGTTTGATTTTTGCCGGTAA 326000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| | Sbjct 327394 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCT 327335 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || |||||||| || |||||||| |||||||||||| Sbjct 327334 TCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAGGAGGGAATTCCACCCGAT 327275 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 ||||| || || || ||||| || || Sbjct 327274 CAACAGCGACTCATTTTTGCTGGTAA 327249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 325857 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325798 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || || ||||| |||||||| ||||| Sbjct 325797 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 325738 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | || |||||||| Sbjct 325737 CAACGTTTGATTTTTGCCGG 325718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 342913 ATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 342854 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||| ||||| || ||||| || ||||| Sbjct 342853 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 342794 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| | |||||||| || || Sbjct 342793 CAACGATTGATATTTGCTGGTAA 342771 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 343200 ATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 343141 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||| ||||| || ||||| || ||||| Sbjct 343140 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 343081 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| | |||||||| || || Sbjct 343080 CAACGCTTGATATTTGCTGGTAA 343058 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 343487 ATGCAAATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 343428 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||| ||||| || ||||| || ||||| Sbjct 343427 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 343368 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| | |||||||| || || Sbjct 343367 CAACGATTGATATTTGCTGGTAA 343345 >seq68 Length=215320 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||||||||| |||| |||||| | ||||||||||||| | |||||||||||| || Sbjct 30927 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 30868 Query 128839 GTTTTCAAACCGCTTTTCCA 128858 ||||||| || || ||||| Sbjct 30867 GTTTTCAGTCCTCTCTTCCA 30848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419694268821610