Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq20 118 2e-21 >seq20 Length=498608 Score = 118 bits (130), Expect = 2e-21 Identities = 119/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||||| | ||||| ||||| | | ||| || || |||||||| ||||| || ||||| Sbjct 325140 TAACTGCATACCGGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 325199 Query 68372 AATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 ||| |||||||| || ||| || ||||| | || ||| |||||||| || ||||||| Sbjct 325200 AAT-TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTT 325258 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || |||||||| || || || |||||| Sbjct 325259 TTCCAGTAAGGGTCTTAACAAAAATTTGCATT 325290 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||||| | ||||| ||||| | | ||| || || |||||||| ||||| || ||||| Sbjct 298848 TAACTGCATACCGGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 298907 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| || | || || ||| || ||||| | || ||| |||||||| ||||||||||| Sbjct 298908 AATTTTACCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 298967 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || || || || || || ||||| Sbjct 298968 TCCAGTAAGCGTTTTAACAAAAATTTGCAT 298997 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||||| ||||| ||||||||||| || ||||| || ||||| || Sbjct 327248 CTTACCAGCAAAAATGAGTCGCTGTTGATCGGGTGGAATTCCCTCCTTATCCTGAATTTT 327307 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||||| | ||| ||||||| || |||||||| || || Sbjct 327308 ACCCTTCACATTTTCAATTGTGTCTGAAGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 327367 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||| || || || |||||||||||| Sbjct 327368 GAGAGTTTTCACAAATATCTGCATT 327392 Score = 105 bits (116), Expect = 1e-17 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | | ||| || || |||||||| ||||| || |||||||| ||| Sbjct 299140 TTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAAT-TTT 299198 Query 68379 GCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || ||| || ||||| | || ||| || ||||| |||||||||||||| || Sbjct 299199 GCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTTTCCAGT 299258 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 |||||||| || || || |||||| Sbjct 299259 AAGGGTCTTAACAAAAATTTGCATT 299283 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| | | || || ||||| | | ||| || || |||||||| || || || ||||||| Sbjct 298568 ACTACATACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAA 298627 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || | || || ||| || ||||| | || ||| |||||||| ||||| ||||||| Sbjct 298628 TTTTACCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTC 298687 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||||||||| || || || |||||| Sbjct 298688 CAGTGAGGGTCTTAACAAAAATTTGCATT 298716 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | |||||| || || || |||||||||||||| || ||||| || Sbjct 343776 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 343835 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || ||||||||||||| || ||| ||||| | || || |||||||| || Sbjct 343836 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 343895 Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464 || ||||| || ||||||||||| || Sbjct 343896 AGAGTCTTCACAAATATCTGCATAAT 343921 Score = 100 bits (110), Expect = 5e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || ||||| | |||||| ||||||||||| || || || || ||||| |||||| Sbjct 300398 CCAGCAAAAATGAGCCGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT-TTTGCC 300456 Query 68382 -TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || |||| ||||| | ||| ||||||| || |||||||| || ||||| Sbjct 300457 TTTCACATTTTCAATGGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAG 300516 Query 68441 GGTCTTGACGAATATCTGCATT 68462 || || || |||||||||||| Sbjct 300517 AGTTTTCACAAATATCTGCATT 300538 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| | | || || ||||| | | ||| || || |||||||| || || || |||||| Sbjct 324860 ACTACATACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTACCTTGAA 324919 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || | || || ||| || ||||| | || ||| |||||||| ||||| ||||||| Sbjct 324920 TTTTACCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTC 324979 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||||||||| || || || |||||| Sbjct 324980 CAGTGAGGGTCTTAACAAAAATTTGCATT 325008 Score = 96.9 bits (106), Expect = 6e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | | ||| || || |||||||| ||||| || |||||||| ||| Sbjct 326279 TTACCAGCAAATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAAT-TTT 326337 Query 68379 GCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || || ||| || || |||| | ||| |||||||| |||||||||||||| || Sbjct 326338 GCTTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGT 326397 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || || || |||||| Sbjct 326398 AAGCGTCTTAACAAAAATTTGCATT 326422 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || ||||| | || ||| || || || |||||||||||||| |||||||| || Sbjct 342770 CTTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTT 342829 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||| || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 342830 ACTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 342889 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | ||| || || || || ||||| Sbjct 342890 TAAGGTTTTCACAAAAATTTGCAT 342913 Score = 89.7 bits (98), Expect = 9e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 |||| ||| || || ||||| | | ||| || || |||||||| || || ||||| || Sbjct 299416 TAACAACTTACCAGCAAATATCAAACGTTGCTGATCAGGTGGAATTCCCTCTTTGTCCTG 299475 Query 68372 AATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 || |||||||| || || || ||||| | || || |||||||| |||||||||| Sbjct 299476 TAT-TTTGCCTTTTACATTTTCTATAGTGTCGGATGGCTCCACTTCCAAAGTGATGGTTT 299534 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || || || ||||| |||||||| Sbjct 299535 TCCCAGTAAGCGTTTTAACGAAAATCTGCAT 299565 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || | | ||| || || |||||||| || || || || || || || Sbjct 325999 CTTACCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTAT-TT 326057 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || ||| || || |||| | ||| |||||||| |||||||||||||| | Sbjct 326058 TGCCTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAG 326117 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| || || || |||||| Sbjct 326118 TAAGCGTCTTAACAAAAATTTGCATT 326143 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || ||||| | | ||| || || || |||||||||||||| |||||||| || Sbjct 343057 CTTACCAGCAAATATCAAGCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTT 343116 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||| || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 343117 ACTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 343176 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | ||| || || || || ||||| Sbjct 343177 TAAGGTTTTCACAAAAATTTGCAT 343200 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || || |||||||||||||| |||||||| || Sbjct 343345 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 343404 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||| || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 343405 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 343464 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || || ||||| Sbjct 343465 AATGTTTTCACAAAAATTTGCAT 343487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921546435273680