Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 8e-15 seq2999 95.1 3e-14 seq20 93.3 1e-13 seq3603 91.5 3e-13 >seq7 Length=818235 Score = 96.9 bits (106), Expect = 8e-15 Identities = 197/286 (69%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426 ||||| || || ||||| ||| ||||||||||||||| || || ||| || || Sbjct 211329 CCGAATTGACCAATCGGCAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 211270 Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486 | || | ||||| | |||| |||| |||||||| || || ||| || ||| Sbjct 211269 AAATTTATAATGGTGCTCATCAGACTGACTTCACCATGGTGGTAAGCTGAATGTTCAGCA 211210 Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGC 325542 ||| |||| | ||| || |||||||| || |||| | ||||||||||| | Sbjct 211209 ACGGAACCAGCAAGCTGAGCGACCTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAG 211152 Query 325543 TGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCG 325602 |||| | | ||||| ||||| ||| || || |||||||| | ||| |||||||| || Sbjct 211151 TGAACAAA--ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACG 211094 Query 325603 TTCCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647 || || | | || ||||||||| | || ||||||||||| Sbjct 211093 CTCGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 211049 >seq2999 Length=368 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| ||| || ||| ||| ||||| ||||||||||| ||||| || Sbjct 182 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 123 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || |||||||||| |||| || || ||||| | ||||| || ||||| || || Sbjct 122 TTTACATTTTCTATAGTATCGGACGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 63 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| Sbjct 62 GTTTTAACGAAAATCTGCAT 43 >seq20 Length=498608 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || || || |||||| ||| ||||| ||||||||||| ||||| || Sbjct 300398 CCAGCAAAAATGAGCCGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTGCCT 300457 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || || || | ||| ||||| || || || || ||||| || ||| Sbjct 300458 TTCACATTTTCAATGGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAGA 300517 Query 288454 GTCTTGACGAATATCTGCATT 288474 || || || |||||||||||| Sbjct 300518 GTTTTCACAAATATCTGCATT 300538 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || || || ||||||||| ||| ||||| || |||||||| ||||| Sbjct 327249 TTACCAGCAAAAATGAGTCGCTGTTGATCGGGTGGAATTCCCTCCTTATCCTGAATTTTA 327308 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | ||| ||||| || || || || ||||| || Sbjct 327309 CCCTTCACATTTTCAATTGTGTCTGAAGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 327368 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 327369 AGAGTTTTCACAAATATCTGCATT 327392 >seq3603 Length=332 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| ||| || ||| ||| ||||| ||||||||||| ||||| || Sbjct 151 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 210 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || |||||||||| |||| | || ||||| | ||||| || ||||| || || Sbjct 211 TTTACATTTTCTATAGTATCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 270 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| Sbjct 271 GTTTTAACGAAAATCTGCAT 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179554736160732