Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7 104 5e-17 >seq7 Length=818235 Score = 104 bits (114), Expect = 5e-17 Identities = 229/337 (68%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || ||||| |||| |||||| || ||| | || || | | || | ||||| || Sbjct 211380 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 211321 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||||| ||| ||||||||||||||| || || ||| || || | || | Sbjct 211320 CCAATCGGCAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 211261 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 ||||| | |||| |||| |||||||| || || ||| || |||||| |||| Sbjct 211260 ATGGTGCTCATCAGACTGACTTCACCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCA 211201 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATAT 297672 | ||| || |||||||| || |||| | ||||||||||| | |||| | | Sbjct 211200 GCAAGCTGAGCGACCTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAGTGAACAAA- 211144 Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT- 297731 ||||| ||||| ||| || || |||||||| | ||| |||||||| || || || Sbjct 211143 -ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATC 211085 Query 297732 CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768 | | || ||||||||| | || ||||||||||| Sbjct 211084 CATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 211049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102786822493900