Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015-
11-24] 6,594 sequences; 49,152,658 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq117 111 2e-19
seq51 100 3e-16
seq5 95.1 1e-14
seq3 95.1 1e-14
>seq117
Length=126953
Score = 111 bits (122), Expect = 2e-19
Identities = 80/91 (88%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051
||| |||||||||| |||| |||| | |||||||||| |||| ||||||||||||||||
Sbjct 50626 TTTTTGAAAAATTT-CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGG 50684
Query 57052 ACATACTCACCACTATACTACCGAGGATTGA 57082
||||||||||||||||||||||||| |||
Sbjct 50685 GAATACTCACCACTATACTACCGAGGACTGA 50715
>seq51
Length=263223
Score = 100 bits (110), Expect = 3e-16
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||
Sbjct 28246 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 28187
Query 57065 TATACTACCGAGGAT 57079
|||||||||||||||
Sbjct 28186 TATACTACCGAGGAT 28172
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| |||| | |||||||||| |||| ||| |||||||||||| |||||||||||
Sbjct 27549 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCACGTGACAGGCGGGAATACTCACCAC 27490
Query 57065 TATACTACCGAGGAT 57079
|||||||||||||||
Sbjct 27489 TATACTACCGAGGAT 27475
>seq5
Length=908979
Score = 95.1 bits (104), Expect = 1e-14
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|||| | |||| |||| | |||||||||| |||| |||||||||||||||| |||||
Sbjct 603048 AAAACATCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 603107
Query 57059 CACCACTATACTACCGAGGA 57078
||||||||||||||||||||
Sbjct 603108 CACCACTATACTACCGAGGA 603127
>seq3
Length=1211087
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 458765 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 458706
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 458705 TACTACCGAGGA 458694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543168025684960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |