Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq117 111 2e-19 seq51 100 3e-16 seq5 95.1 1e-14 seq3 95.1 1e-14 >seq117 Length=126953 Score = 111 bits (122), Expect = 2e-19 Identities = 80/91 (88%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||| |||||||||| |||| |||| | |||||||||| |||| |||||||||||||||| Sbjct 50626 TTTTTGAAAAATTT-CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGG 50684 Query 57052 ACATACTCACCACTATACTACCGAGGATTGA 57082 ||||||||||||||||||||||||| ||| Sbjct 50685 GAATACTCACCACTATACTACCGAGGACTGA 50715 >seq51 Length=263223 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 28246 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 28187 Query 57065 TATACTACCGAGGAT 57079 ||||||||||||||| Sbjct 28186 TATACTACCGAGGAT 28172 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| |||| ||| |||||||||||| ||||||||||| Sbjct 27549 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCACGTGACAGGCGGGAATACTCACCAC 27490 Query 57065 TATACTACCGAGGAT 57079 ||||||||||||||| Sbjct 27489 TATACTACCGAGGAT 27475 >seq5 Length=908979 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| |||| |||||||||||||||| ||||| Sbjct 603048 AAAACATCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 603107 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 603108 CACCACTATACTACCGAGGA 603127 >seq3 Length=1211087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 458765 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 458706 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 458705 TACTACCGAGGA 458694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543168025684960