Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq68 111 2e-19 seq20 82.4 8e-11 >seq68 Length=215320 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223 ||||||||||| |||| || | |||||| |||||| | | ||| || || |||||| Sbjct 30307 TTTGCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGAAGGCTGAACATTCCAC 30248 Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283 ||||| ||||| | || |||| ||| || || | | |||| | ||| || || Sbjct 30247 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 30188 Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343 | |||||||||| ||||| || ||||||||| ||||| || | |||||| |||| Sbjct 30187 AACTGTTTTGCCAAATCGCAGCTACTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 30128 Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403 | || || |||| | | |||| || ||| |||| ||| ||| | | |||||| Sbjct 30127 TTCTTATTCAACAGTCTAGCTTCTTCGGATTCAAACGGATATCGCAACAAAATGAAAGCA 30068 Query 154404 TCGGCGAGCCCTTG 154417 || || | |||||| Sbjct 30067 TCCGCCAACCCTTG 30054 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873 |||||| | |||||||||||| | ||| |||| ||| || ||||| || || Sbjct 29457 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCGTGAGG 29398 Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933 |||||||| |||||| | ||| || | ||| ||||| |||| ||| || | ||| Sbjct 29397 ACACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAACAGATCGGGTATCCA 29338 Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993 | ||||| |||||||| | || | || ||||| ||| || ||| ||| | Sbjct 29337 AAGGGCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTG-TTCTTTTTCGCGT 29279 Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047 ||| ||||||| ||||||| |||||||| || || ||||| || || | ||| || Sbjct 29278 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGCAAACGCCCC 29224 >seq20 Length=498608 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 64297 CTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356 |||| | |||||| | || | || ||||| || || |||||||||||||| ||||| || Sbjct 325143 CTGCATACCGGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT 325202 Query 64357 TTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCC 64416 ||| |||||| ||| | ||| || | |||||||| | ||| | ||| || || Sbjct 325203 TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTTCC 325262 Query 64417 GGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || || || |||||||||||| Sbjct 325263 AGTAAGGGTCTTAACAAAAATTTGCATT 325290 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| |||| | || ||||| || || |||||||| ||||| || |||||||| Sbjct 325999 CTTACCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTT 326058 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| ||| | |||||| | || ||||| | ||| | ||| || || || Sbjct 326059 GCCTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGT 326118 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | || || || |||||||||||| Sbjct 326119 AAGCGTCTTAACAAAAATTTGCATT 326143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499603616777360