Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq81 105 5e-18 >seq81 Length=178828 Score = 105 bits (116), Expect = 5e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 ||||| || ||||| | || | |||||||||||||| || | |||||| ||||||||| Sbjct 160291 CCGTCTCGTCCGGCACGCCCAGTTTCTTGATAATAACCTTCGACTGATTTCGGCATACTG 160350 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCG 118296 || || || || || |||||||| || || || |||||||| ||||| ||||| |||| Sbjct 160351 TGGTGAATGACGAAACGCACGTCCGGCTTGTCTATGCCCATGCCGAAAGCTATGGTCG 160408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381742119067536