Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq20 107 1e-18 seq3603 87.8 1e-12 seq2999 87.8 1e-12 >seq20 Length=498608 Score = 107 bits (118), Expect = 1e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| ||| ||||| |||||||||| || || || |||||||||||| || || | Sbjct 299134 AATTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGA 299193 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||||| ||||||| | ||||| || ||| ||| || || || || |||||||| Sbjct 299194 ATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTTT 299253 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 299254 CCAGTAAGGGTCTTAACAAAAATTTGCAT 299282 Score = 100 bits (110), Expect = 2e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 15044 ATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAA 15103 |||||||||| || || || |||||||||||| || || |||||||| ||||||| Sbjct 325157 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACAT 325216 Query 15104 TTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15163 | ||||| || ||| ||| || || || ||||||||||| || || || || || | Sbjct 325217 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTTCCAGTAAGGGTCTTAA 325276 Query 15164 CAAAAATTTGCAT 15176 ||||||||||||| Sbjct 325277 CAAAAATTTGCAT 325289 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| |||| ||||| || || || |||||||||||| || || ||||||| Sbjct 326279 TTACCAGCAAATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTG 326338 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||||||| | ||||| ||||| ||| || || || || |||||||| || || Sbjct 326339 CTTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326398 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| Sbjct 326399 AGCGTCTTAACAAAAATTTGCAT 326421 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| |||||||||| || || || ||||||||| || || || |||||| Sbjct 325430 TTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 325489 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||| ||| | ||||| ||||| ||| || || || ||||||||||| || || Sbjct 325490 CTTTTCACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTA 325549 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| Sbjct 325550 AGTGTCTTAACAAAAATTTGCAT 325572 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 15044 ATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAA 15103 |||| ||||| || || || |||||||||||| || || |||||| | ||| ||| Sbjct 298865 ATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCTTTCACAT 298924 Query 15104 TTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15163 | ||||| || ||| ||| || || || || |||||||| || || || ||||| | Sbjct 298925 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTAAGCGTTTTAA 298984 Query 15164 CAAAAATTTGCATA 15177 |||||||||||||| Sbjct 298985 CAAAAATTTGCATA 298998 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 |||||||| || || || ||||||||| || || || ||||||| ||||||| | Sbjct 325727 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTC 325786 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 ||||| ||||| ||| || || || ||||||||||| || || || || || ||| Sbjct 325787 TCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACA 325846 Query 15166 AAAATTTGCAT 15176 ||||||||||| Sbjct 325847 AAAATTTGCAT 325857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 |||||||| || || || ||||||||| || || || ||||||| ||||||| | Sbjct 326012 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTC 326071 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 ||||| ||||| ||| || || || || |||||||| || || || || || ||| Sbjct 326072 TCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTAAGCGTCTTAACA 326131 Query 15166 AAAATTTGCAT 15176 ||||||||||| Sbjct 326132 AAAATTTGCAT 326142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | |||||||| ||| ||||||||| ||||| || |||||| Sbjct 327249 TTACCAGCAAAAATGAGTCGCTGTTGATCGGGTGGAATTCCCTCCTTATCCTGAATTTTA 327308 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| |||| || || || | ||| || || | ||||||||||| || || Sbjct 327309 CCCTTCACATTTTCAATTGTGTCTGAAGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 327368 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| ||||| || ||||| || Sbjct 327369 AGAGTTTTCACAAATATCTGCATTTT 327394 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| |||||||||| || || || ||||||||| || || || |||||| | | Sbjct 298576 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCT 298635 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| | ||||| || ||| ||| || || || || || ||||| || || || Sbjct 298636 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 298695 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 298696 GTCTTAACAAAAATTTGCAT 298715 >seq3603 Length=332 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 |||||||| || || || ||||||||| || || || ||||||| ||||||| || Sbjct 160 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTT 219 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 |||||||||||| || || || || || |||||||| || || || ||||| || Sbjct 220 TCTATAGTATCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTTTAACG 279 Query 15166 AAAATTTGCAT 15176 ||||| ||||| Sbjct 280 AAAATCTGCAT 290 >seq2999 Length=368 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 |||||||| || || || ||||||||| || || || ||||||| ||||||| || Sbjct 173 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTT 114 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 |||||||||||| || || || || || |||||||| || || || ||||| || Sbjct 113 TCTATAGTATCGGACGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTTTAACG 54 Query 15166 AAAATTTGCAT 15176 ||||| ||||| Sbjct 53 AAAATCTGCAT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357363278415290